HHsearch alignment for GI: 254780627 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=98.36 E-value=1e-05 Score=60.64 Aligned_cols=201 Identities=18% Similarity=0.195 Sum_probs=123.0
Q ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r 168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
T Consensus 188 lIG~S~~m~~l~~~i~~vA~sd---------~pVLI~GEtGTGKelvAr~IH~--~S~R~~~Pfv~vNCaalpe~l~Ese 256 (510)
T PRK05022 188 MIGQSPAMQQLKKEIEVVAASD---------LNVLITGETGVGKELVARAIHQ--ASPRAVKPLVYLNCAALPESLAESE 256 (510)
T ss_pred EEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHH--CCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 5208999999999999996899---------9889889898139999999996--6887899857888999985678998
Q ss_pred H----CCC----HHHHHHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHH----------HHHCCCEEEEECCCCHHHH
Q ss_conf 6----198----899999974--0310205444453175069999999999----------8856987999648756761
Q gi|254780627|r 246 R----DNC----ALNLKDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNS----------LLDSAKQVVAAADRPPSEL 305 (502)
Q Consensus 246 ~----~~~----~~~fr~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~----------l~~~gkqiv~tsd~~P~~l 305 (502)
T Consensus 257 LFGh~kGaFtGA~~~r~G~fe~A~gGTLfLDEI~~Lp-l~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~ 335 (510)
T PRK05022 257 LFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP-LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREE 335 (510)
T ss_pred HCCCCCCCCCCCCCCCCCCEEECCCCEEEEECHHHCC-HHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHH
T ss_conf 6597778868865567881017789879875745499-999999999984795885589946666689996078359999
Q ss_pred C---CCCHHHHHHHHCCEEEEECCCCHHHHHHH----HHHHHHHHHHH--CCCCCCCHHHHHHHHH-HCCCCHHHHHHHH
Q ss_conf 3---63034576530211577515888999999----99999886431--1689789899999985-0278889999999
Q gi|254780627|r 306 E---SLDPRIRSRLQGGVSVPLGLHDYEMRFSI----LKNRLAISQKE--DPKLNINEEVLMHVAR-TVTTSGRELDGAF 375 (502)
Q Consensus 306 ~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~I----l~~k~~~~~~~--~~~~~l~~~v~~~la~-~~~~~vR~Legal 375 (502)
T Consensus 336 V~~G~FR~DLYyRLs---v~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVRELenvI 412 (510)
T PRK05022 336 VLAGRFRADLYHRLS---VFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVRELEHVI 412 (510)
T ss_pred HHCCCHHHHHHHHHH---CCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 883963899998762---04034808655554099999999999999829898988899999997099997899999999
Q ss_pred HHHHHHHH
Q ss_conf 99999863
Q gi|254780627|r 376 NQLVFRHS 383 (502)
Q Consensus 376 ~~l~~~~~ 383 (502)
T Consensus 413 eRA~lla~ 420 (510)
T PRK05022 413 SRAALLAR 420 (510)
T ss_pred HHHHHHHC
T ss_conf 99999715