HHsearch alignment for GI: 254780627 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=97.35 E-value=0.019 Score=37.47 Aligned_cols=138 Identities=23% Similarity=0.348 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHHC-------CCEEEEECCC-----CHHHHCCCCHHHHHHHH
Q ss_conf 10205444453175-----------0699999999998856-------9879996487-----56761363034576530
Q gi|254780627|r 261 DLLLIDDMQFLQGK-----------LIQHEFCHLLNSLLDS-------AKQVVAAADR-----PPSELESLDPRIRSRLQ 317 (502)
Q Consensus 261 DvLliDDiqfl~gk-----------~tqee~f~~~n~l~~~-------gkqiv~tsd~-----~P~~l~~l~~rL~SR~~ 317 (502)
T Consensus 250 GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDL---IPEl~GRlP 326 (442)
T PRK05201 250 GIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDL---IPELQGRFP 326 (442)
T ss_pred CCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHH---HHHHCCCCE
T ss_conf 70451146565303578898977330788878875388555677760255034550450014782022---498717550
Q ss_pred CCEEEEECCCCHHHHHHHH--------HHHHHHHHHHCCCCCCCHHHHHHHHHHCCC--------CHHHHHHHHHHHHHH
Q ss_conf 2115775158889999999--------999988643116897898999999850278--------889999999999998
Q gi|254780627|r 318 GGVSVPLGLHDYEMRFSIL--------KNRLAISQKEDPKLNINEEVLMHVARTVTT--------SGRELDGAFNQLVFR 381 (502)
Q Consensus 318 ~Gl~~~i~~Pd~e~r~~Il--------~~k~~~~~~~~~~~~l~~~v~~~la~~~~~--------~vR~Legal~~l~~~ 381 (502)
T Consensus 327 --v~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~E~vl~d 404 (442)
T PRK05201 327 --IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 404 (442)
T ss_pred --EEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf --588824499999999967861578999999986249679984799999999999851447667737889999999898
Q ss_pred HHHC------C--CCCHHHHHHHHHHHHCC
Q ss_conf 6302------4--68778899999876303
Q gi|254780627|r 382 HSFA------P--ILTAEIADELLSHLVNT 403 (502)
Q Consensus 382 ~~~~------~--~~~~~~~~~~l~~~~~~ 403 (502)
T Consensus 405 ~~Fe~p~~~~~~v~I~~~~V~~~l~~i~~~ 434 (442)
T PRK05201 405 ISFEAPDRSGEKITIDAAYVDEKLGDLVKD 434 (442)
T ss_pred HCCCCCCCCCCEEEECHHHHHHHHHHHHHC
T ss_conf 614688999977998899999999887635