HHsearch alignment for GI: 254780627 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=92.35 E-value=1 Score=25.20 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=57.6
Q ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHH-HHHHHHHHHHHCC---C-------------HHHHHHH
Q ss_conf 555489862788885799-99999999863068816864698-8899999998619---8-------------8999999
Q gi|254780627|r 195 RLNPLFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAE-YFMWRFASAIRDN---C-------------ALNLKDS 256 (502)
Q Consensus 195 ~~NPLfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e-~F~~~~~~a~~~~---~-------------~~~fr~~ 256 (502)
T Consensus 185 ~~~~~LL~GvTGSGKTevYl~li~~-~l~~--GkqvLiLvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~i 261 (699)
T PRK05580 185 GFSAFLLDGVTGSGKTEVYLQAIAE-ALAQ--GKQALVLVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLAA 261 (699)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHH-HHHC--CCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 8871787478986079999999999-9973--997899917678789999999987099579964889857999999999
Q ss_pred ------------------HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCEEEEECCCCHH
Q ss_conf ------------------74031020544445317506999999999988----569879996487567
Q gi|254780627|r 257 ------------------LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLL----DSAKQVVAAADRPPS 303 (502)
Q Consensus 257 ------------------~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~----~~gkqiv~tsd~~P~ 303 (502)
T Consensus 262 ~~G~~~IVIGtRSAvFaP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~Ra~~~~~~liLgSaTPSl 330 (699)
T PRK05580 262 LRGEARVVIGTRSALFAPFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLRAKQEGCPVVLGSATPSL 330 (699)
T ss_pred HCCCCEEEEECCCEEECCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCH
T ss_conf 769971999736011065789848999736545444666876119999999999849988961689999