HHsearch alignment for GI: 254780627 and conserved domain: PRK05580

>PRK05580 primosome assembly protein PriA; Validated.
Probab=92.35  E-value=1  Score=25.20  Aligned_cols=106  Identities=19%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             CCCEEEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHH-HHHHHHHHHHHCC---C-------------HHHHHHH
Q ss_conf             555489862788885799-99999999863068816864698-8899999998619---8-------------8999999
Q gi|254780627|r  195 RLNPLFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAE-YFMWRFASAIRDN---C-------------ALNLKDS  256 (502)
Q Consensus       195 ~~NPLfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e-~F~~~~~~a~~~~---~-------------~~~fr~~  256 (502)
T Consensus       185 ~~~~~LL~GvTGSGKTevYl~li~~-~l~~--GkqvLiLvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~i  261 (699)
T PRK05580        185 GFSAFLLDGVTGSGKTEVYLQAIAE-ALAQ--GKQALVLVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLAA  261 (699)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHH-HHHC--CCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             8871787478986079999999999-9973--997899917678789999999987099579964889857999999999


Q ss_pred             ------------------HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH----HCCCEEEEECCCCHH
Q ss_conf             ------------------74031020544445317506999999999988----569879996487567
Q gi|254780627|r  257 ------------------LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLL----DSAKQVVAAADRPPS  303 (502)
Q Consensus       257 ------------------~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~----~~gkqiv~tsd~~P~  303 (502)
T Consensus       262 ~~G~~~IVIGtRSAvFaP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~Ra~~~~~~liLgSaTPSl  330 (699)
T PRK05580        262 LRGEARVVIGTRSALFAPFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLRAKQEGCPVVLGSATPSL  330 (699)
T ss_pred             HCCCCEEEEECCCEEECCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCH
T ss_conf             769971999736011065789848999736545444666876119999999999849988961689999