HHsearch alignment for GI: 254780627 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=94.64 E-value=0.43 Score=27.82 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=73.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH-------------CCCCCEEEEEHHHHHHHHHHHHHCCCHHH---HHHHH---
Q ss_conf 548986278888579999999999863-------------06881686469888999999986198899---99997---
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKR-------------QPNLRVVYLTAEYFMWRFASAIRDNCALN---LKDSL--- 257 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~-------------~~~~~v~y~~~e~F~~~~~~a~~~~~~~~---fr~~~--- 257 (502)
T Consensus 20 HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~--~~i~pe~k-------~~~~~Id~iR~l~~~i~~~ 90 (290)
T PRK05917 20 SAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDI--HEFFPEGK-------GRLHSIETPRAIKKQIWIH 90 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCE--EEECCCCC-------CCCCCHHHHHHHHHHHCCC
T ss_conf 06876899986599999999999857899616889874689985--99615777-------8878678999999996418
Q ss_pred ---HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHH
Q ss_conf ---40310205444453175069999999999885698799964875676136303457653021157751588899999
Q gi|254780627|r 258 ---RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 (502)
Q Consensus 258 ---r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~ 334 (502)
T Consensus 91 p~~g~~KV~IId~Ad~Mn-~~AaNALLKtLEEPP~~t-vfILit~~~----~~lLpTI~SRCQ~---I~i--~~~e---- 155 (290)
T PRK05917 91 PYEANYKIYIIHEADRMT-LDAISAFLKVLEDPPKHS-VIILTSAKP----QRLPPTIRSRSLS---IHI--PGEE---- 155 (290)
T ss_pred CCCCCCEEEEECCHHHHC-HHHHHHHHHHHCCCCCCE-EEEEEECCH----HHCCHHHHHCCCE---EEC--CCCC----
T ss_conf 646882699975677638-999999999734798785-999986992----5482377633511---677--7620----
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 9999998864311689789899999985027888
Q gi|254780627|r 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 (502)
Q Consensus 335 Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~v 368 (502)
T Consensus 156 --------------~~~i~~e~~~~l~~~a~g~~ 175 (290)
T PRK05917 156 --------------KTLPSKEDIAYLIRYAQGKE 175 (290)
T ss_pred --------------CCCCCHHHHHHHHHHHCCCH
T ss_conf --------------13478899999999846973