HHsearch alignment for GI: 254780627 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=97.47 E-value=0.0021 Score=44.24 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=41.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC
Q ss_conf 548986278888579999999999863068816864698889999999861
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~ 247 (502)
T Consensus 33 ~~~li~G~~G~GKt~~~~~f~~~~~~~--g~~~~~~~~ee~~~~~~~~~~~ 81 (241)
T PRK06067 33 SLILIEGENDTGKSVLSQQFVWGALNQ--GKRGLAITTENTSKSYLKQMES 81 (241)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHH
T ss_conf 089998079988799999999999867--9829999942899999999998