HHsearch alignment for GI: 254780627 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=99.60 E-value=2.6e-14 Score=121.68 Aligned_cols=132 Identities=20% Similarity=0.307 Sum_probs=106.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-C
Q ss_conf 548986278888579999999999863068816864698889999999861988999999740310205444453175-0
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~ 275 (502)
T Consensus 99 ~Nvil~G~~GtGKThLA~Alg~~A~~~--G~~v~f~~~~~L~~~L~~a~~~g~~~~~~~~l~~~dLLIiDe~g~~~~~~~ 176 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFATAAQWVARLAAAHHAGRLQDELVKLGRIPLLIVDEVGYIPFEAE 176 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf 878998999986899999999999986--996799877999999999885580999999851368776502136447889
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC------CCHHHHHHHH-CCEEEEECCCCHHH
Q ss_conf 69999999999885698799964875676136------3034576530-21157751588899
Q gi|254780627|r 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELES------LDPRIRSRLQ-GGVSVPLGLHDYEM 331 (502)
Q Consensus 276 tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~------l~~rL~SR~~-~Gl~~~i~~Pd~e~ 331 (502)
T Consensus 177 ~a~~lf~li~~Rye~-~S~IiTSn~~~~~W~~~f~D~~la~AilDRL~H~a~~i~~~G~SyR~ 238 (254)
T PRK06526 177 AANLFFQLVSSRYER-ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYRL 238 (254)
T ss_pred HHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 999999999999745-88676658986688886486899999999862562899843886653