HHsearch alignment for GI: 254780627 and conserved domain: PRK06585
>PRK06585 holA DNA polymerase III subunit delta; Reviewed.
Probab=97.28 E-value=0.022 Score=36.99 Aligned_cols=208 Identities=10% Similarity=0.104 Sum_probs=126.5
Q ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEHHHHHH---HHHHHHHCCCHHHHHHH
Q ss_conf 9998241001365555548986278888579999999999863-0688168646988899---99999861988999999
Q gi|254780627|r 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR-QPNLRVVYLTAEYFMW---RFASAIRDNCALNLKDS 256 (502)
Q Consensus 181 kaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~-~~~~~v~y~~~e~F~~---~~~~a~~~~~~~~fr~~ 256 (502)
T Consensus 10 ~~f~~~p~~-----~~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d~~~l~de~~t~sl--F~-- 80 (343)
T PRK06585 10 DRFLARPDG-----KIRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDADPARLEDEANTISL--FG-- 80 (343)
T ss_pred HHHHHCCCC-----CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCC--CC--
T ss_conf 999819864-----765899963876479999999999725566787415774799883399999999847687--68--
Q ss_pred HHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHH---HCCEEEEECCCCHHHHH
Q ss_conf 740310205444453175069999999999885698799964875676136303457653---02115775158889999
Q gi|254780627|r 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL---QGGVSVPLGLHDYEMRF 333 (502)
Q Consensus 257 ~r~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~---~~Gl~~~i~~Pd~e~r~ 333 (502)
T Consensus 81 --~~rlI~i~~~----~d~~~~~l~~~l~~-~~~~~~lIi~a~~L~k-----~skLrk~~e~~~~~~~i~cY~d~~~~l~ 148 (343)
T PRK06585 81 --GRRLIWVRAG----GKSLAAALKALLAE-PPGDAFIVIEAGDLKK-----GSSLRKLFETAASAAAIPCYADDERDLA 148 (343)
T ss_pred --CCEEEEEECC----CHHHHHHHHHHHHC-CCCCEEEEEECCCCCC-----CCHHHHHHHHCCCEEEEEECCCCHHHHH
T ss_conf --9848997268----72569999999817-8998289997389773-----1189999986478699950069988999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99999998864311689789899999985027888999999999999863024687788999998763037887579899
Q gi|254780627|r 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIED 413 (502)
Q Consensus 334 ~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 413 (502)
T Consensus 149 ~~i~~~l-----~~~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~------~~~~~~~~ 217 (343)
T PRK06585 149 RLIDDEL-----AKAGLRITPDARAYLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGD------ASALSLDD 217 (343)
T ss_pred HHHHHHH-----HHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC------CCCCCHHH
T ss_conf 9999999-----982999779999999987342799999999999998489997899999998686------41024999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780627|r 414 IQRMVAK 420 (502)
Q Consensus 414 I~~~V~~ 420 (502)
T Consensus 218 l~da~l~ 224 (343)
T PRK06585 218 AADAALA 224 (343)
T ss_pred HHHHHHC
T ss_conf 9999980