HHsearch alignment for GI: 254780627 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.27 E-value=0.00013 Score=52.86 Aligned_cols=211 Identities=17% Similarity=0.191 Sum_probs=123.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE---EEEHHH---
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168---646988---
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV---YLTAEY--- 236 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~---y~~~e~--- 236 (502)
T Consensus 14 ~f~~~v-gq~~-v~~~l~~a~~~--~r~~-----haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~ 84 (696)
T PRK06872 14 TFSEVV-GQEH-ILTALSNGLKE--NRLH-----HAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEE 84 (696)
T ss_pred CHHHHC-CCHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 564523-8599-99999999971--9863-----0475117898888899999999867899999997888622576744
Q ss_pred --HHHHH-HHHHHCCCHHHHHHHHHH---------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf --89999-999861988999999740---------310205444453175069999999999885698799964875676
Q gi|254780627|r 237 --FMWRF-ASAIRDNCALNLKDSLRN---------IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 237 --F~~~~-~~a~~~~~~~~fr~~~r~---------~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 85 g~~~d~~eidaas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~-~~fnallktleepp~~v~f~latt~--~~k 161 (696)
T PRK06872 85 GNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEYVKFLLATTD--PQK 161 (696)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCH-HHHHHHHHHHCCCCCCEEEEEECCC--HHH
T ss_conf 7877546750565578899999998454577677547999700544389-9999998750279754489984386--322
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 162 ---~p~tilsrc---~~f~~~~~~~~~i~~~l~~i-----~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~-- 228 (696)
T PRK06872 162 ---LPITILSRC---MQFHLKALDQTQIAQHLEFI-----LTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMS-- 228 (696)
T ss_pred ---CCHHHHHHH---HHEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf ---748898766---53002689999999999999-----99849977999999999975895677888999999975--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 229 ~g~~~~~~v~~mlg 242 (696)
T PRK06872 229 NANITLDVVSNMLG 242 (696)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89616999999858