HHsearch alignment for GI: 254780627 and conserved domain: PRK06872

>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.27  E-value=0.00013  Score=52.86  Aligned_cols=211  Identities=17%  Similarity=0.191  Sum_probs=123.0

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE---EEEHHH---
Q ss_conf             88763288614789999999982410013655555489862788885799999999998630688168---646988---
Q gi|254780627|r  163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV---YLTAEY---  236 (502)
Q Consensus       163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~---y~~~e~---  236 (502)
T Consensus        14 ~f~~~v-gq~~-v~~~l~~a~~~--~r~~-----haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~   84 (696)
T PRK06872         14 TFSEVV-GQEH-ILTALSNGLKE--NRLH-----HAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEE   84 (696)
T ss_pred             CHHHHC-CCHH-HHHHHHHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf             564523-8599-99999999971--9863-----0475117898888899999999867899999997888622576744


Q ss_pred             --HHHHH-HHHHHCCCHHHHHHHHHH---------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf             --89999-999861988999999740---------310205444453175069999999999885698799964875676
Q gi|254780627|r  237 --FMWRF-ASAIRDNCALNLKDSLRN---------IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE  304 (502)
Q Consensus       237 --F~~~~-~~a~~~~~~~~fr~~~r~---------~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~  304 (502)
T Consensus        85 g~~~d~~eidaas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~-~~fnallktleepp~~v~f~latt~--~~k  161 (696)
T PRK06872         85 GNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEYVKFLLATTD--PQK  161 (696)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCH-HHHHHHHHHHCCCCCCEEEEEECCC--HHH
T ss_conf             7877546750565578899999998454577677547999700544389-9999998750279754489984386--322


Q ss_pred             HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r  305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF  384 (502)
Q Consensus       305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~  384 (502)
T Consensus       162 ---~p~tilsrc---~~f~~~~~~~~~i~~~l~~i-----~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~--  228 (696)
T PRK06872        162 ---LPITILSRC---MQFHLKALDQTQIAQHLEFI-----LTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMS--  228 (696)
T ss_pred             ---CCHHHHHHH---HHEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf             ---748898766---53002689999999999999-----99849977999999999975895677888999999975--


Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             24687788999998
Q gi|254780627|r  385 APILTAEIADELLS  398 (502)
Q Consensus       385 ~~~~~~~~~~~~l~  398 (502)
T Consensus       229 ~g~~~~~~v~~mlg  242 (696)
T PRK06872        229 NANITLDVVSNMLG  242 (696)
T ss_pred             CCCCCHHHHHHHHC
T ss_conf             89616999999858