HHsearch alignment for GI: 254780627 and conserved domain: PRK07261

>PRK07261 topology modulation protein; Provisional.
Probab=92.72  E-value=0.34  Score=28.54  Aligned_cols=97  Identities=15%  Similarity=0.259  Sum_probs=63.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC--CH
Q ss_conf             8986278888579999999999863068816864698889999999861988999999740310205444453175--06
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--LI  276 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk--~t  276 (502)
T Consensus         3 I~IiG~sGsGKSTlAr~L~~~~--------------------------------------~ip~~~LD~l~w~p~w~~~~   44 (171)
T PRK07261          3 IAIIGYSGSGKSTLARFLGQHY--------------------------------------NCPVLHLDQLHFSSNWQERD   44 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH--------------------------------------CCCEEEECCEEECCCCEECC
T ss_conf             9998899986899999999987--------------------------------------97979702278889998888


Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC-CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99999999998856987999648756761363-034576530211577515888999999999998
Q gi|254780627|r  277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA  341 (502)
Q Consensus       277 qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l-~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~  341 (502)
T Consensus        45 ~~e~~~~~~~~~~~~~WIi-DGny~~----~~~~~rl~---~aD~iI~Ld~p~~~~l~rvikR~l~  102 (171)
T PRK07261         45 DDDMIADISNFLLKQDWII-EGNYSN----CLYEERMA---EADQIIFLNFSRFNCLYRAFKRYLK  102 (171)
T ss_pred             HHHHHHHHHHHHHCCCEEE-ECCCCC----HHHHHHHH---HCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf             9999999999984898799-478512----47776797---7999999858499999999999999