HHsearch alignment for GI: 254780627 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=92.72 E-value=0.34 Score=28.54 Aligned_cols=97 Identities=15% Similarity=0.259 Sum_probs=63.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC--CH
Q ss_conf 8986278888579999999999863068816864698889999999861988999999740310205444453175--06
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--LI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk--~t 276 (502)
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~--------------------------------------~ip~~~LD~l~w~p~w~~~~ 44 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHY--------------------------------------NCPVLHLDQLHFSSNWQERD 44 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--------------------------------------CCCEEEECCEEECCCCEECC
T ss_conf 9998899986899999999987--------------------------------------97979702278889998888
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC-CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99999999998856987999648756761363-034576530211577515888999999999998
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 (502)
Q Consensus 277 qee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l-~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~ 341 (502)
T Consensus 45 ~~e~~~~~~~~~~~~~WIi-DGny~~----~~~~~rl~---~aD~iI~Ld~p~~~~l~rvikR~l~ 102 (171)
T PRK07261 45 DDDMIADISNFLLKQDWII-EGNYSN----CLYEERMA---EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred HHHHHHHHHHHHHCCCEEE-ECCCCC----HHHHHHHH---HCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 9999999999984898799-478512----47776797---7999999858499999999999999