HHsearch alignment for GI: 254780627 and conserved domain: PRK07270
>PRK07270 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.75 E-value=1e-06 Score=67.80 Aligned_cols=212 Identities=16% Similarity=0.138 Sum_probs=120.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCC--EEEEEHHHHHH
Q ss_conf 887632886147899999999824100136555554898627888857999999999986306-881--68646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP-NLR--VVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~-~~~--v~y~~~e~F~~ 239 (502)
T Consensus 13 ~F~dvv-GQe~i~~-~L~nal~~--~ri~-----HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~ 83 (557)
T PRK07270 13 TFDEMV-GQEVVAT-TLKQAVES--GKIS-----HAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITN 83 (557)
T ss_pred CHHHHC-CHHHHHH-HHHHHHHC--CCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 876714-8199999-99999985--9954-----0442108998689999999999957999899998887779999875
Q ss_pred H------HHHHHHCCCHHHHHH---H--HH----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 9------999986198899999---9--74----0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 R------FASAIRDNCALNLKD---S--LR----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 ~------~~~a~~~~~~~~fr~---~--~r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 84 g~~~DviEidaas~~gVd~IRei~~~~~~~P~~~~yKV~IIDEah~Ls-~~A~NALLKtLEEPP~~~vFIL~Tte--p~- 159 (557)
T PRK07270 84 GSLEDVIEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYIIDEVHMLS-TGAFNALLKTLEEPTENVVFILATTE--LH- 159 (557)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC-HHHHHHHHHHHHCCCCCEEEEEEECC--HH-
T ss_conf 899974873477767889999999984238777883899971445349-99999899985289987699998499--47-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 160 --kIl~TI~SRCQr---f~F~~i~~~~i~~~L~~I-----~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ~~s~~~- 228 (557)
T PRK07270 160 --KIPATILSRVQR---FEFKSIKTKAIREHLAWI-----LDKEGISFEVEALNLIARRAEGGMRDALSILDQALSLSQ- 228 (557)
T ss_pred --HCCHHHHHHHHH---CCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-
T ss_conf --592888743000---108889999999999999-----998399869999999999779968789999999997179-
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 229 ~~~it~~~v~~~~G 242 (557)
T PRK07270 229 DNQVTIAIAEEITG 242 (557)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 99767999999968