HHsearch alignment for GI: 254780627 and conserved domain: PRK07471

>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=97.30  E-value=0.0056  Score=41.19  Aligned_cols=179  Identities=15%  Similarity=0.123  Sum_probs=96.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE--------EEEHHHHHH
Q ss_conf             288614789999999982410013655555489862788885799999999998630688168--------646988899
Q gi|254780627|r  168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV--------YLTAEYFMW  239 (502)
Q Consensus       168 VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~--------y~~~e~F~~  239 (502)
T Consensus        19 liGqe~~~~~L-~~a~~~--grl~-----HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~   90 (363)
T PRK07471         19 LFGHAAAEAAL-LDAYRS--GRLH-----HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVA   90 (363)
T ss_pred             CCCHHHHHHHH-HHHHHC--CCCC-----CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHH
T ss_conf             16819999999-999985--9976-----458767999818899999999998579997777767870531258777289


Q ss_pred             HHHHHHHCC--------------------CHHHHH---HHHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf             999998619--------------------889999---9974------03102054444531750699999999998856
Q gi|254780627|r  240 RFASAIRDN--------------------CALNLK---DSLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDS  290 (502)
Q Consensus       240 ~~~~a~~~~--------------------~~~~fr---~~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~  290 (502)
T Consensus        91 r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn-~~aaNALLK~LEEPP-~  168 (363)
T PRK07471         91 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMN-ANAANALLKVLEEPP-A  168 (363)
T ss_pred             HHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHC-HHHHHHHHHHHCCCC-C
T ss_conf             99952699984667620011333212445399999999997248524896699986878738-899999999721589-8


Q ss_pred             CCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf             98799964875676136303457653021157751588899999999999886431168978989999998502788899
Q gi|254780627|r  291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE  370 (502)
Q Consensus       291 gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~  370 (502)
T Consensus       169 ~t~fiLit~~~~----~llpTI~SRCq---~~~~~~l~~~~~~~~L~~--------~~~~~~~~~~~~~la~~a~Gs~~~  233 (363)
T PRK07471        169 RSLLLLVSHAPA----RLLPTIRSRCR---KLRLRPLAPEDVIAALAE--------AGGPALDDAELAALAALAEGSVGR  233 (363)
T ss_pred             CEEEEEEECCHH----HCHHHHHHHCC---CCCCCCCCHHHHHHHHHH--------HCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf             838998639977----77799997352---425899599999999998--------438999989999999975899999


Q ss_pred             H
Q ss_conf             9
Q gi|254780627|r  371 L  371 (502)
Q Consensus       371 L  371 (502)
T Consensus       234 A  234 (363)
T PRK07471        234 A  234 (363)
T ss_pred             H
T ss_conf             9