HHsearch alignment for GI: 254780627 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=100.00 E-value=0 Score=395.36 Aligned_cols=220 Identities=23% Similarity=0.336 Sum_probs=194.6
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 45576447887632886147899999999824100136555554898627888857999999999986306881686469
Q gi|254780627|r 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 155 ~s~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
T Consensus 12 ~~~l~~~~tfdnFi~g~n~~~~~al~~~~~~~~~--------~~l~l~G~~G~GKTHLLqA~~~~~~~~--~~~~~yl~~ 81 (235)
T PRK08084 12 PLYLPDDETFASFYPGDNDSLLAALQNVLRQEHS--------GYIYLWGREGAGRSHLLHAACAELSQR--GDAVGYVPL 81 (235)
T ss_pred CCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCC--------CEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEEH
T ss_conf 8999997663023448869999999999857898--------769998999988899999999999707--985799877
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHH
Q ss_conf 8889999999861988999999740310205444453175-069999999999885698-79996487567613630345
Q gi|254780627|r 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 235 e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL 312 (502)
T Consensus 82 ~~~~~-~--------~~~~l~~l~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL 152 (235)
T PRK08084 82 DKRAW-F--------VPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred HHHHH-H--------HHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHH
T ss_conf 98665-1--------79999876418989982745546997899999999999998489669996798824302312889
Q ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HCCCCCHH
Q ss_conf 76530211577515888999999999998864311689789899999985027888999999999999863-02468778
Q gi|254780627|r 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAE 391 (502)
Q Consensus 313 ~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~-~~~~~~~~ 391 (502)
T Consensus 153 ~SRl~~g~~~~i~~~dde~~~~iL~~~-----a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip 227 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLR-----ARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDKASITAQRKLTIP 227 (235)
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 999956972785599989999999999-----997399999899999998615889999999999999999819999999
Q ss_pred HHHHHHH
Q ss_conf 8999998
Q gi|254780627|r 392 IADELLS 398 (502)
Q Consensus 392 ~~~~~l~ 398 (502)
T Consensus 228 ~vkevL~ 234 (235)
T PRK08084 228 FVKEILK 234 (235)
T ss_pred HHHHHHC
T ss_conf 9999965