HHsearch alignment for GI: 254780627 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=97.93 E-value=0.00028 Score=50.45 Aligned_cols=122 Identities=16% Similarity=0.269 Sum_probs=90.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHC-----------CC---------------H
Q ss_conf 548986278888579999999999863068816864698889999999861-----------98---------------8
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-----------NC---------------A 250 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~-----------~~---------------~ 250 (502)
T Consensus 25 s~~li~G~~GtGKsi~~~~~~~~~l~~--g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~ 102 (230)
T PRK08533 25 SIILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 489998689987899999999999878--986999994389999999999869981799757967999613433540457
Q ss_pred HHHH------HHHHHCCHHHHHHHHHH-CCC---CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCE
Q ss_conf 9999------99740310205444453-175---0699999999998856987999648756761363034576530211
Q gi|254780627|r 251 LNLK------DSLRNIDLLLIDDMQFL-QGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 (502)
Q Consensus 251 ~~fr------~~~r~~DvLliDDiqfl-~gk---~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl 320 (502)
T Consensus 103 ~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~--p~~---~~e~~l~~lrs~a 177 (230)
T PRK08533 103 RDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTAN--PKE---LPESVLLILRTAS 177 (230)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CCC---CCHHHHHHHHEEE
T ss_conf 89999997326643798999905318851677789999999999999858988999956--331---3624544204104
Q ss_pred EEEEC
Q ss_conf 57751
Q gi|254780627|r 321 SVPLG 325 (502)
Q Consensus 321 ~~~i~ 325 (502)
T Consensus 178 Dv~i~ 182 (230)
T PRK08533 178 TILIR 182 (230)
T ss_pred EEEEE
T ss_conf 89999