HHsearch alignment for GI: 254780627 and conserved domain: PRK08770
>PRK08770 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.77 E-value=0.00067 Score=47.76 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=117.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH---HHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168646988---899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY---FMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~---F~~ 239 (502)
T Consensus 14 ~f~~~~-gq~~-~~~~l~~~~~~--~~~~-----~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~ 84 (663)
T PRK08770 14 RFAELV-GQEH-VVRALSNALDS--GRVH-----HAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDA 84 (663)
T ss_pred CHHHHC-CCHH-HHHHHHHHHHC--CCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 464522-8599-99999999970--9974-----0476227998888899999999867899999997877877898854
Q ss_pred -HH-----HHHHHCCCHHHHHHHHH---------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf -99-----99986198899999974---------0310205444453175069999999999885698799964875676
Q gi|254780627|r 240 -RF-----ASAIRDNCALNLKDSLR---------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 (502)
Q Consensus 240 -~~-----~~a~~~~~~~~fr~~~r---------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~ 304 (502)
T Consensus 85 ~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~-~fna~lktleepp~~v~f~~att~--~~- 160 (663)
T PRK08770 85 GRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKA-AFNALLKTLEEPPEHVKFLLATTD--PQ- 160 (663)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHH-HHHHHHHHHCCCCCCEEEEEECCC--HH-
T ss_conf 89886588646765888999999984435887774369997004332899-999998740278644289985487--33-
Q ss_pred HCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 13630345765302115775158889999999999988643116897898999999850278889999999999998630
Q gi|254780627|r 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 (502)
Q Consensus 305 l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~ 384 (502)
T Consensus 161 --k~p~t~~src~~---f~~~~~~~~~~~~~l~~~-----~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q~~~~~-- 228 (663)
T PRK08770 161 --KLPVTVLSRCLQ---FNLKRLDEDQIQGQMTRI-----LAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYA-- 228 (663)
T ss_pred --HCCHHHHHHHHH---CCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--
T ss_conf --374899988876---343779999999999999-----99839976999999999974785677888999999866--
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24687788999998
Q gi|254780627|r 385 APILTAEIADELLS 398 (502)
Q Consensus 385 ~~~~~~~~~~~~l~ 398 (502)
T Consensus 229 ~~~~~~~~v~~mlg 242 (663)
T PRK08770 229 GGALREDVVRTMLG 242 (663)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89768999999848