HHsearch alignment for GI: 254780627 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=99.59 E-value=6.1e-14 Score=119.05 Aligned_cols=167 Identities=16% Similarity=0.272 Sum_probs=120.5
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 44788763288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 160 pryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
T Consensus 69 ~~ktle~fDf~~~~~l~~~~i~~La~---~~fi~~~-~Nvil~G~~GtGKThLA~Alg~~A~~~--G~~v~f~~~~~L~~ 142 (258)
T PRK09183 69 AVKTFEEYDFTFATGAPQKQLQSLRS---LSFIERN-ENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTTAADLLL 142 (258)
T ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHC---CCHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHH
T ss_conf 98777555654688623899998825---8166558-867998999986899999999999987--99399978999999
Q ss_pred HHHHHHHCCCHHH-HHHHHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-C------CH
Q ss_conf 9999986198899-99997403102054444531750-69999999999885698799964875676136-3------03
Q gi|254780627|r 240 RFASAIRDNCALN-LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES-L------DP 310 (502)
Q Consensus 240 ~~~~a~~~~~~~~-fr~~~r~~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l------~~ 310 (502)
T Consensus 143 ~L~~a~~~~~~~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~-~S~IiTSn~~~~~W~~~f~~D~~la~ 221 (258)
T PRK09183 143 QLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-GAMILTSNLPFGQWDQTFAGDAALTS 221 (258)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCCHHHHH
T ss_conf 99999876859999998743465144313315468888999999999998576-77899889997898565168699999
Q ss_pred HHHHHHH-CCEEEEECCCCHHHHH
Q ss_conf 4576530-2115775158889999
Q gi|254780627|r 311 RIRSRLQ-GGVSVPLGLHDYEMRF 333 (502)
Q Consensus 311 rL~SR~~-~Gl~~~i~~Pd~e~r~ 333 (502)
T Consensus 222 AilDRL~H~a~~i~l~GeSyR~k~ 245 (258)
T PRK09183 222 AMLDRLLHHSHVVQIKGESYRLKQ 245 (258)
T ss_pred HHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 999986046179974587723765