HHsearch alignment for GI: 254780627 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=99.59  E-value=6.1e-14  Score=119.05  Aligned_cols=167  Identities=16%  Similarity=0.272  Sum_probs=120.5

Q ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf             44788763288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r  160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW  239 (502)
Q Consensus       160 pryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~  239 (502)
T Consensus        69 ~~ktle~fDf~~~~~l~~~~i~~La~---~~fi~~~-~Nvil~G~~GtGKThLA~Alg~~A~~~--G~~v~f~~~~~L~~  142 (258)
T PRK09183         69 AVKTFEEYDFTFATGAPQKQLQSLRS---LSFIERN-ENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTTAADLLL  142 (258)
T ss_pred             CCCCHHHCCCCCCCCCCHHHHHHHHC---CCHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHH
T ss_conf             98777555654688623899998825---8166558-867998999986899999999999987--99399978999999


Q ss_pred             HHHHHHHCCCHHH-HHHHHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-C------CH
Q ss_conf             9999986198899-99997403102054444531750-69999999999885698799964875676136-3------03
Q gi|254780627|r  240 RFASAIRDNCALN-LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES-L------DP  310 (502)
Q Consensus       240 ~~~~a~~~~~~~~-fr~~~r~~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l------~~  310 (502)
T Consensus       143 ~L~~a~~~~~~~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~-~S~IiTSn~~~~~W~~~f~~D~~la~  221 (258)
T PRK09183        143 QLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-GAMILTSNLPFGQWDQTFAGDAALTS  221 (258)
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCCHHHHH
T ss_conf             99999876859999998743465144313315468888999999999998576-77899889997898565168699999


Q ss_pred             HHHHHHH-CCEEEEECCCCHHHHH
Q ss_conf             4576530-2115775158889999
Q gi|254780627|r  311 RIRSRLQ-GGVSVPLGLHDYEMRF  333 (502)
Q Consensus       311 rL~SR~~-~Gl~~~i~~Pd~e~r~  333 (502)
T Consensus       222 AilDRL~H~a~~i~l~GeSyR~k~  245 (258)
T PRK09183        222 AMLDRLLHHSHVVQIKGESYRLKQ  245 (258)
T ss_pred             HHHHHHCCCEEEEEECCCCCCHHH
T ss_conf             999986046179974587723765