HHsearch alignment for GI: 254780627 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.93 E-value=0.1 Score=32.16 Aligned_cols=235 Identities=14% Similarity=0.151 Sum_probs=118.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC--------------------------
Q ss_conf 554898627888857999999999986306881686469888999999986198--------------------------
Q gi|254780627|r 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC-------------------------- 249 (502)
Q Consensus 196 ~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~-------------------------- 249 (502)
T Consensus 24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~-GE~~lyitl~E~~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~ 102 (501)
T PRK09302 24 GRPTLVSGTAGTGKTLFALQFLHNGIKSF-GEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEE 102 (501)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 97799983899999999999999998855-99789998579999999999984998689732683899961567431113
Q ss_pred -----HHHHHHHH----H--HCCHHHHHHHHHHC---C-C-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHH----CCCC
Q ss_conf -----89999997----4--03102054444531---7-5-0699999999998856987999648756761----3630
Q gi|254780627|r 250 -----ALNLKDSL----R--NIDLLLIDDMQFLQ---G-K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL----ESLD 309 (502)
Q Consensus 250 -----~~~fr~~~----r--~~DvLliDDiqfl~---g-k-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l----~~l~ 309 (502)
T Consensus 103 ~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~~~~~~R~~l~~L~~~l~~~g~T~llt~E~~~~~~~~~~~g~E 182 (501)
T PRK09302 103 AGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYDNPAVVRRELFRLFAWLKQKGVTAVMTGERGDEYGPIARYGVE 182 (501)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHH
T ss_conf 34476899999999999971999999999789987635878999999999999987797799987566667875434524
Q ss_pred HHHHHHHHCCEEEEECCCCHHH---HHHHHHHHHHHHH-------HHCCCCCC-C--HHHH--HHHHHHCCCCHHHHHHH
Q ss_conf 3457653021157751588899---9999999998864-------31168978-9--8999--99985027888999999
Q gi|254780627|r 310 PRIRSRLQGGVSVPLGLHDYEM---RFSILKNRLAISQ-------KEDPKLNI-N--EEVL--MHVARTVTTSGRELDGA 374 (502)
Q Consensus 310 ~rL~SR~~~Gl~~~i~~Pd~e~---r~~Il~~k~~~~~-------~~~~~~~l-~--~~v~--~~la~~~~~~vR~Lega 374 (502)
T Consensus 183 e~----vaDGVI~L~~~~~~~~~~R~L~V~KmRGs~~~~g~h~f~It~~Gi~V~P~~~~~~~~~~~~~rv~tGi~~LD~l 258 (501)
T PRK09302 183 EF----VSDCVVILRNVLEGEKRTRTLEILKYRGTTHGKGEYPFTITEDGISVLPLTAMRLTQRSSNERISSGVPDLDEM 258 (501)
T ss_pred HH----HCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 42----01307887654148852589999983588666872337987998899803624335666520004797327887
Q ss_pred HHH-HHHHHH--HCCCC---CHHHHHHHHHHHHCCCCCC-----CCCHHHHHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 999-999863--02468---7788999998763037887-----57989999999998099999940888774
Q gi|254780627|r 375 FNQ-LVFRHS--FAPIL---TAEIADELLSHLVNTGETK-----KMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 (502)
Q Consensus 375 l~~-l~~~~~--~~~~~---~~~~~~~~l~~~~~~~~~~-----~i~~~~I~~~V~~~~~i~~~~l~s~~R~~ 436 (502)
T Consensus 259 lgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~-a~~~G~dl~~~~~~G~l~ 330 (501)
T PRK09302 259 CGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRN-ATSWGIDLEEMERKGLLK 330 (501)
T ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH-HHHCCCCHHHHHHCCCEE
T ss_conf 259975894699988999888999999999998659908999996799999999-997399848887489479