HHsearch alignment for GI: 254780627 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=98.44 E-value=9.4e-06 Score=60.89 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=122.3
Q ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r 168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
T Consensus 141 liG~S~am~~v~~~i~~~A~s~---------~pVLI~GE~GTGK~~~Ar~I-H~~-S~r~~~pfv~vnC~~l~~~l~ese 209 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSE---------ATVLIHGDSGTGKELVARAI-HAS-SARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred CEECCHHHHHHHHHHHHHHCCC---------CCEEEECCCCHHHHHHHHHH-HHC-CCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 6668999999999999984889---------94899899981099999999-965-787789807987898984555898
Q ss_pred ----HCCCHH---HH-HHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHHHH----------HCCCEEEEECCCCHHHH
Q ss_conf ----619889---99-99974--031020544445317506999999999988----------56987999648756761
Q gi|254780627|r 246 ----RDNCAL---NL-KDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNSLL----------DSAKQVVAAADRPPSEL 305 (502)
Q Consensus 246 ----~~~~~~---~f-r~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~l~----------~~gkqiv~tsd~~P~~l 305 (502)
T Consensus 210 LFG~~~gaftga~~~~~g~~~~A~gGTLfLdeI~~l~-~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~ 288 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS-PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAE 288 (441)
T ss_pred HCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHH
T ss_conf 6177556878965346898778899825502315299-999999998777521000588734413637998378899999
Q ss_pred ---CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHHHCCC---CCCCHHHHHHH-HHHCCCCHHHHHHH
Q ss_conf ---36303457653021157751588899999----999999886431168---97898999999-85027888999999
Q gi|254780627|r 306 ---ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQKEDPK---LNINEEVLMHV-ARTVTTSGRELDGA 374 (502)
Q Consensus 306 ---~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~~~~~---~~l~~~v~~~l-a~~~~~~vR~Lega 374 (502)
T Consensus 289 v~~g~Fr~dLy~rL~~---~~i~lPpLReR~eDI~~L~~~fl~~~-~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~ 364 (441)
T PRK10365 289 VNAGRFRQDLYYRLNV---VAIEVPSLRQRREDIPLLAGHFLQRF-AERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 (441)
T ss_pred HHCCCCHHHHHHHHCC---HHCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 8819825899988601---11378260006200999999999999-9984999888899999999709999899999999
Q ss_pred HHHHHHHHHHCCCCCH
Q ss_conf 9999998630246877
Q gi|254780627|r 375 FNQLVFRHSFAPILTA 390 (502)
Q Consensus 375 l~~l~~~~~~~~~~~~ 390 (502)
T Consensus 365 iera~~~~~-~~~i~~ 379 (441)
T PRK10365 365 VERAVVLLT-GEYISE 379 (441)
T ss_pred HHHHHHHCC-CCCCCH
T ss_conf 999999578-986884