HHsearch alignment for GI: 254780627 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.03 E-value=0.00016 Score=52.24 Aligned_cols=178 Identities=16% Similarity=0.235 Sum_probs=108.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH----HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 48986278888579999999999863068816864698889----99999986198899999974031020544445317
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM----WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~----~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~g 273 (502)
T Consensus 351 IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEiDK~~~ 430 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS 430 (784)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHCC
T ss_conf 79964699877246999999985898699806887888882564334344368389999997489885665003555224
Q ss_pred C-C--HHHHHHHHHHH-------------HHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHH
Q ss_conf 5-0--69999999999-------------885698799964875676136303457653021157751588899999999
Q gi|254780627|r 274 K-L--IQHEFCHLLNS-------------LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 (502)
Q Consensus 274 k-~--tqee~f~~~n~-------------l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~ 337 (502)
T Consensus 431 ~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN---~~~-ip~pLlDRmE---~i~~~gYt~~eK~~Ia~ 503 (784)
T PRK10787 431 DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSN---SMN-IPAPLLDRME---VIRLSGYTEDEKLNIAK 503 (784)
T ss_pred CCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECC---CCC-CCHHHHHHEE---EEEECCCCHHHHHHHHH
T ss_conf 5589988999984597655640003220464522258997327---677-8767763121---55411676788999999
Q ss_pred HHH-----HHHHHHCCCCCCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_conf 999-----8864311689789899999985027--88899999999999986
Q gi|254780627|r 338 NRL-----AISQKEDPKLNINEEVLMHVARTVT--TSGRELDGAFNQLVFRH 382 (502)
Q Consensus 338 ~k~-----~~~~~~~~~~~l~~~v~~~la~~~~--~~vR~Legal~~l~~~~ 382 (502)
T Consensus 504 ~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~ 555 (784)
T PRK10787 504 RHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKA 555 (784)
T ss_pred HHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7453999998289965674399999998753365444251688999999999