HHsearch alignment for GI: 254780627 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=98.99 E-value=6e-08 Score=76.51 Aligned_cols=216 Identities=17% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCHHHHHHHCCCCCHHHHHH--HHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE----
Q ss_conf 64478876328861478999--999998241001365555548986278888579999999999863068816864----
Q gi|254780627|r 159 DSRFVFSTFIEGSSNRVALT--AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL---- 232 (502)
Q Consensus 159 NpryTFDnFVVG~sN~lA~a--AAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~---- 232 (502)
T Consensus 319 ~~~~~f~~l~-g~s~~~~~~~~~a~~~a~~~---------~pVLI~GE~GtGKe~lAraIH~~S~r~--~~pfv~vnC~a 386 (639)
T PRK11388 319 KVSHTFDHMP-QDSPQMRRLIHFGRQAAKSS---------FPILLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQL 386 (639)
T ss_pred CCCCCHHHCC-CCCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHHHHCCCCC--CCCEEEEECCC
T ss_conf 7888855446-79999999999999996889---------968988989810999999999557778--99818987898
Q ss_pred -EHHHHHHHHHHHHH----CCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH--H--H------CCCEEEEE
Q ss_conf -69888999999986----19889999997403102054444531750699999999998--8--5------69879996
Q gi|254780627|r 233 -TAEYFMWRFASAIR----DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSL--L--D------SAKQVVAA 297 (502)
Q Consensus 233 -~~e~F~~~~~~a~~----~~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~l--~--~------~gkqiv~t 297 (502)
T Consensus 387 i~~~~~e~elfG~~~~~~~~g~~g~~e--~A~gGTL~LdeI~~lp-~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaa 463 (639)
T PRK11388 387 LPDEALAEEFLGSDRTDSENGRLSKFE--LAHGGTLFLEKVEYLS-VELQSALLQVLKTGVITRLDSRRLIPVDVRVIAT 463 (639)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCHHH--CCCCCEEEECCHHHCC-HHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEE
T ss_conf 984678998738776764346686244--0369828846726499-9999999999865937856999466642799973
Q ss_pred CCCCHHHH---CCCCHHHHHHHHCCEEEEECCCCHHHHHH----HHHHHHHHHHH-HCCCCCCCHHHHHHHHH-HCCCCH
Q ss_conf 48756761---36303457653021157751588899999----99999988643-11689789899999985-027888
Q gi|254780627|r 298 ADRPPSEL---ESLDPRIRSRLQGGVSVPLGLHDYEMRFS----ILKNRLAISQK-EDPKLNINEEVLMHVAR-TVTTSG 368 (502)
Q Consensus 298 sd~~P~~l---~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~----Il~~k~~~~~~-~~~~~~l~~~v~~~la~-~~~~~v 368 (502)
T Consensus 464 t~~~l~~~v~~g~fr~dLyyrl~~-~--~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~a~~~L~~y~WPGNv 540 (639)
T PRK11388 464 TTADLAMLVEQNRFSRQLYYALHA-F--EITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (639)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHH-H--HCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHH
T ss_conf 645089998749854999987674-4--1057332325343999999999999997199999899999999728999799
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9999999999998630246877889
Q gi|254780627|r 369 RELDGAFNQLVFRHSFAPILTAEIA 393 (502)
Q Consensus 369 R~Legal~~l~~~~~~~~~~~~~~~ 393 (502)
T Consensus 541 rEL~nvl~~a~~~~~-~~~I~~~~L 564 (639)
T PRK11388 541 FELRSVIENLALSSD-NGRIRLSDL 564 (639)
T ss_pred HHHHHHHHHHHHHCC-CCCCCHHHC
T ss_conf 999999999998389-984267978