HHsearch alignment for GI: 254780627 and conserved domain: PRK11823

>PRK11823 DNA repair protein RadA; Provisional.
Probab=96.29  E-value=0.077  Score=33.09  Aligned_cols=106  Identities=25%  Similarity=0.324  Sum_probs=66.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHHC------------CCHHHHHHHHH--HCCHH
Q ss_conf             8986278888579999999999863068816864698889999-999861------------98899999974--03102
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIRD------------NCALNLKDSLR--NIDLL  263 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~~------------~~~~~fr~~~r--~~DvL  263 (502)
T Consensus        93 iLlgGePGIGKSTLlLQ~a~~la~---~~~vLYvSGEES~~Qik~RA~RLg~~~~~l~l~~et~l~~Il~~i~~~~P~~l  169 (454)
T PRK11823         93 VLIGGDPGIGKSTLLLQVAAALAA---GGKVLYVSGEESLQQIKLRAERLGLPSDNLYLLAETNLEDILATIEEEKPDLV  169 (454)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHC---CCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEE
T ss_conf             995079988899999999999855---99579981501578999999975888887378853689999999986099889


Q ss_pred             HHHHHHHHC--------CCCHH-HH-HHHHHHHHHHCCCEEEEECC-------CCHHHHCC
Q ss_conf             054444531--------75069-99-99999998856987999648-------75676136
Q gi|254780627|r  264 LIDDMQFLQ--------GKLIQ-HE-FCHLLNSLLDSAKQVVAAAD-------RPPSELES  307 (502)
Q Consensus       264 liDDiqfl~--------gk~tq-ee-~f~~~n~l~~~gkqiv~tsd-------~~P~~l~~  307 (502)
T Consensus       170 IIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEH  230 (454)
T PRK11823        170 VIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEH  230 (454)
T ss_pred             EEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHH
T ss_conf             9943111541566778997899999999999999744982899997726776466145222