HHsearch alignment for GI: 254780627 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=96.29 E-value=0.077 Score=33.09 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=66.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHHC------------CCHHHHHHHHH--HCCHH
Q ss_conf 8986278888579999999999863068816864698889999-999861------------98899999974--03102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIRD------------NCALNLKDSLR--NIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~-~~a~~~------------~~~~~fr~~~r--~~DvL 263 (502)
T Consensus 93 iLlgGePGIGKSTLlLQ~a~~la~---~~~vLYvSGEES~~Qik~RA~RLg~~~~~l~l~~et~l~~Il~~i~~~~P~~l 169 (454)
T PRK11823 93 VLIGGDPGIGKSTLLLQVAAALAA---GGKVLYVSGEESLQQIKLRAERLGLPSDNLYLLAETNLEDILATIEEEKPDLV 169 (454)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHC---CCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCEE
T ss_conf 995079988899999999999855---99579981501578999999975888887378853689999999986099889
Q ss_pred HHHHHHHHC--------CCCHH-HH-HHHHHHHHHHCCCEEEEECC-------CCHHHHCC
Q ss_conf 054444531--------75069-99-99999998856987999648-------75676136
Q gi|254780627|r 264 LIDDMQFLQ--------GKLIQ-HE-FCHLLNSLLDSAKQVVAAAD-------RPPSELES 307 (502)
Q Consensus 264 liDDiqfl~--------gk~tq-ee-~f~~~n~l~~~gkqiv~tsd-------~~P~~l~~ 307 (502)
T Consensus 170 IIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEH 230 (454)
T PRK11823 170 VIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEH 230 (454)
T ss_pred EEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHH
T ss_conf 9943111541566778997899999999999999744982899997726776466145222