HHsearch alignment for GI: 254780627 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.76 E-value=0.0093 Score=39.63 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=75.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHH---HHHHHH---C
Q ss_conf 8986278888579999999999863068816864698889-------99999986-----1988999---999740---3
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNL---KDSLRN---I 260 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~f---r~~~r~---~ 260 (502)
T Consensus 244 IALVGPTGVGKTTTIAKLAArf~~~--~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka~~ 321 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 9998999988899999999998616--98089998066347699999999998499439968889999999987633688
Q ss_pred CHHHHHHHHHHCCC----C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH
Q ss_conf 10205444453175----0-699999999998856987999648756761363034576
Q gi|254780627|r 261 DLLLIDDMQFLQGK----L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 (502)
Q Consensus 261 DvLliDDiqfl~gk----~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S 314 (502)
T Consensus 322 DLILIDT----AGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~ 376 (436)
T PRK11889 322 DYILIDT----AGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred CEEEEEC----CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 8899929----898846899999999998512777169999788998999999997257