HHsearch alignment for GI: 254780627 and conserved domain: PRK11889

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.76  E-value=0.0093  Score=39.63  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=75.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-------HHHHHHHH-----CCCHHHH---HHHHHH---C
Q ss_conf             8986278888579999999999863068816864698889-------99999986-----1988999---999740---3
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-------WRFASAIR-----DNCALNL---KDSLRN---I  260 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-------~~~~~a~~-----~~~~~~f---r~~~r~---~  260 (502)
T Consensus       244 IALVGPTGVGKTTTIAKLAArf~~~--~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka~~  321 (436)
T PRK11889        244 IALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  321 (436)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             9998999988899999999998616--98089998066347699999999998499439968889999999987633688


Q ss_pred             CHHHHHHHHHHCCC----C-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHH
Q ss_conf             10205444453175----0-699999999998856987999648756761363034576
Q gi|254780627|r  261 DLLLIDDMQFLQGK----L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS  314 (502)
Q Consensus       261 DvLliDDiqfl~gk----~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~S  314 (502)
T Consensus       322 DLILIDT----AGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~  376 (436)
T PRK11889        322 DYILIDT----AGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD  376 (436)
T ss_pred             CEEEEEC----CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf             8899929----898846899999999998512777169999788998999999997257