HHsearch alignment for GI: 254780627 and conserved domain: PRK12323

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.16  E-value=4.3e-05  Score=56.21  Aligned_cols=211  Identities=16%  Similarity=0.173  Sum_probs=123.9

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC------CE--EEEEH
Q ss_conf             88763288614789999999982410013655555489862788885799999999998630688------16--86469
Q gi|254780627|r  163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL------RV--VYLTA  234 (502)
Q Consensus       163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~------~v--~y~~~  234 (502)
T Consensus        14 ~F~~~v-GQ~~-v~~~l~na~~--~~r~~-----haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C   84 (721)
T PRK12323         14 DFTTLV-GQEH-VVRALTHALE--QQRLH-----HAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRAC   84 (721)
T ss_pred             CHHHHC-CCHH-HHHHHHHHHH--CCCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             665532-8599-9999999997--19975-----4475027998889899999999976899866789878878776546


Q ss_pred             HH-----HHHHH-HHHHHCCCHHHHHHHHHH---------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             88-----89999-999861988999999740---------3102054444531750699999999998856987999648
Q gi|254780627|r  235 EY-----FMWRF-ASAIRDNCALNLKDSLRN---------IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD  299 (502)
Q Consensus       235 e~-----F~~~~-~~a~~~~~~~~fr~~~r~---------~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd  299 (502)
T Consensus        85 ~~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~-~afnalLKtlEePP~hv~FilaTT~  163 (721)
T PRK12323         85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTN-HAFNAMLKTLEEPPPHVKFILATTD  163 (721)
T ss_pred             HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCH-HHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             877568987647743676788899999998545588766446999854000589-9999999840179755389994386


Q ss_pred             CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             75676136303457653021157751588899999999999886431168978989999998502788899999999999
Q gi|254780627|r  300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV  379 (502)
Q Consensus       300 ~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~  379 (502)
T Consensus       164 --~~---Kip~TilSRc~---~f~~~~~~~~~i~~~l~~i-----~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQai  230 (721)
T PRK12323        164 --PQ---KIPVTVLSRCL---QFNLKQMPPGHIVSHLDAI-----LGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQAI  230 (721)
T ss_pred             --HH---HCCHHHHHHHH---HCCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             --34---48588987765---4234789999999999999-----99839977999999999975896476888999999


Q ss_pred             HHHHHCCCCCHHHHHHHHH
Q ss_conf             9863024687788999998
Q gi|254780627|r  380 FRHSFAPILTAEIADELLS  398 (502)
Q Consensus       380 ~~~~~~~~~~~~~~~~~l~  398 (502)
T Consensus       231 a~~~--g~~~~~~v~~mlg  247 (721)
T PRK12323        231 AYSA--GNVSEEAVRGMLG  247 (721)
T ss_pred             HHCC--CCCCHHHHHHHHC
T ss_conf             8658--9626999999868