HHsearch alignment for GI: 254780627 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.16 E-value=4.3e-05 Score=56.21 Aligned_cols=211 Identities=16% Similarity=0.173 Sum_probs=123.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC------CE--EEEEH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688------16--86469
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL------RV--VYLTA 234 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~------~v--~y~~~ 234 (502)
T Consensus 14 ~F~~~v-GQ~~-v~~~l~na~~--~~r~~-----haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C 84 (721)
T PRK12323 14 DFTTLV-GQEH-VVRALTHALE--QQRLH-----HAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRAC 84 (721)
T ss_pred CHHHHC-CCHH-HHHHHHHHHH--CCCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 665532-8599-9999999997--19975-----4475027998889899999999976899866789878878776546
Q ss_pred HH-----HHHHH-HHHHHCCCHHHHHHHHHH---------CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 88-----89999-999861988999999740---------3102054444531750699999999998856987999648
Q gi|254780627|r 235 EY-----FMWRF-ASAIRDNCALNLKDSLRN---------IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 235 e~-----F~~~~-~~a~~~~~~~~fr~~~r~---------~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
T Consensus 85 ~~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~-~afnalLKtlEePP~hv~FilaTT~ 163 (721)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTN-HAFNAMLKTLEEPPPHVKFILATTD 163 (721)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCH-HHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 877568987647743676788899999998545588766446999854000589-9999999840179755389994386
Q ss_pred CCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 75676136303457653021157751588899999999999886431168978989999998502788899999999999
Q gi|254780627|r 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 300 ~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~ 379 (502)
T Consensus 164 --~~---Kip~TilSRc~---~f~~~~~~~~~i~~~l~~i-----~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQai 230 (721)
T PRK12323 164 --PQ---KIPVTVLSRCL---QFNLKQMPPGHIVSHLDAI-----LGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQAI 230 (721)
T ss_pred --HH---HCCHHHHHHHH---HCCCCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf --34---48588987765---4234789999999999999-----99839977999999999975896476888999999
Q ss_pred HHHHHCCCCCHHHHHHHHH
Q ss_conf 9863024687788999998
Q gi|254780627|r 380 FRHSFAPILTAEIADELLS 398 (502)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~ 398 (502)
T Consensus 231 a~~~--g~~~~~~v~~mlg 247 (721)
T PRK12323 231 AYSA--GNVSEEAVRGMLG 247 (721)
T ss_pred HHCC--CCCCHHHHHHHHC
T ss_conf 8658--9626999999868