HHsearch alignment for GI: 254780627 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=99.81 E-value=1.8e-18 Score=151.34 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=143.7
Q ss_pred CCCC---HHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5764---47887632-8861478999999998241001365555548986278888579999999999863068816864
Q gi|254780627|r 157 PLDS---RFVFSTFI-EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 (502)
Q Consensus 157 ~LNp---ryTFDnFV-VG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~ 232 (502)
T Consensus 63 ~i~~~h~~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~~~-----~NlIf~G~pGtGKTHLA~AIg~~a~~~--G~sVlF~ 135 (248)
T PRK12377 63 GIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGC-----TNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVV 135 (248)
T ss_pred CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf 685376438634564578789999999999999873188-----608998999987889999999999987--9969998
Q ss_pred EHHHHHHHHHHHHHCCCH-HHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-CCC
Q ss_conf 698889999999861988-999999740310205444453175-06999999999988569879996487567613-630
Q gi|254780627|r 233 TAEYFMWRFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SLD 309 (502)
Q Consensus 233 ~~e~F~~~~~~a~~~~~~-~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~-~l~ 309 (502)
T Consensus 136 t~~dLv~~L~~a~~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilg 215 (248)
T PRK12377 136 TVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLG 215 (248)
T ss_pred EHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 89999999999998485099999997338989860005788986799999999999985579868975899779988875
Q ss_pred HHHHHHH--HCCEEEEECCCCHHHH
Q ss_conf 3457653--0211577515888999
Q gi|254780627|r 310 PRIRSRL--QGGVSVPLGLHDYEMR 332 (502)
Q Consensus 310 ~rL~SR~--~~Gl~~~i~~Pd~e~r 332 (502)
T Consensus 216 dailDRL~~h~~~~i~f~GeSYRk~ 240 (248)
T PRK12377 216 ERVMDRMTMNGGRWVNFNWESWRPN 240 (248)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 9999999866934998617311135