HHsearch alignment for GI: 254780627 and conserved domain: PRK12377

>PRK12377 putative replication protein; Provisional.
Probab=99.81  E-value=1.8e-18  Score=151.34  Aligned_cols=169  Identities=21%  Similarity=0.319  Sum_probs=143.7

Q ss_pred             CCCC---HHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             5764---47887632-8861478999999998241001365555548986278888579999999999863068816864
Q gi|254780627|r  157 PLDS---RFVFSTFI-EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL  232 (502)
Q Consensus       157 ~LNp---ryTFDnFV-VG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~  232 (502)
T Consensus        63 ~i~~~h~~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~~~-----~NlIf~G~pGtGKTHLA~AIg~~a~~~--G~sVlF~  135 (248)
T PRK12377         63 GIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGC-----TNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVV  135 (248)
T ss_pred             CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEE
T ss_conf             685376438634564578789999999999999873188-----608998999987889999999999987--9969998


Q ss_pred             EHHHHHHHHHHHHHCCCH-HHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-CCC
Q ss_conf             698889999999861988-999999740310205444453175-06999999999988569879996487567613-630
Q gi|254780627|r  233 TAEYFMWRFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SLD  309 (502)
Q Consensus       233 ~~e~F~~~~~~a~~~~~~-~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~-~l~  309 (502)
T Consensus       136 t~~dLv~~L~~a~~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilg  215 (248)
T PRK12377        136 TVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLG  215 (248)
T ss_pred             EHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf             89999999999998485099999997338989860005788986799999999999985579868975899779988875


Q ss_pred             HHHHHHH--HCCEEEEECCCCHHHH
Q ss_conf             3457653--0211577515888999
Q gi|254780627|r  310 PRIRSRL--QGGVSVPLGLHDYEMR  332 (502)
Q Consensus       310 ~rL~SR~--~~Gl~~~i~~Pd~e~r  332 (502)
T Consensus       216 dailDRL~~h~~~~i~f~GeSYRk~  240 (248)
T PRK12377        216 ERVMDRMTMNGGRWVNFNWESWRPN  240 (248)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             9999999866934998617311135