HHsearch alignment for GI: 254780627 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.26 E-value=5.5e-09 Score=83.87 Aligned_cols=189 Identities=20% Similarity=0.245 Sum_probs=124.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH---
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630688168646988899---
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW--- 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~--- 239 (502)
T Consensus 13 ~~~dvv-Gq~~i~--~~L~~~~~~-~~~p-----h-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~ 82 (337)
T PRK12402 13 LFEDIL-GQESVV--DHLSALAAS-GNLP-----H-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGK 82 (337)
T ss_pred CHHHHC-CCHHHH--HHHHHHHHC-CCCC-----E-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCC
T ss_conf 799803-979999--999999977-9987-----6-98889298489999999999967997567833311653113564
Q ss_pred ----------HHHHH-HHC--CCHHHHHHHH------H----HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf ----------99999-861--9889999997------4----03102054444531750699999999998856987999
Q gi|254780627|r 240 ----------RFASA-IRD--NCALNLKDSL------R----NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVA 296 (502)
Q Consensus 240 ----------~~~~a-~~~--~~~~~fr~~~------r----~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~ 296 (502)
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt-~~Aq~aLlk~lEe~-~~~~~fIl 160 (337)
T PRK12402 83 KYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALR-EDAQQALRRIMERY-SETCRFIF 160 (337)
T ss_pred CEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 00101664234420153327737899999999986148877880499970713179-99999999887408-87669987
Q ss_pred ECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6487567613630345765302115775158889999999999988643116897898999999850278889999999
Q gi|254780627|r 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 (502)
Q Consensus 297 tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal 375 (502)
T Consensus 161 ~t~~~~----~ii~tI~SRC---~~i~F~~~s~~~i~~~L~~I-----~~~E~i~~~~~~l~~ia~~s~GdlR~ain~L 227 (337)
T PRK12402 161 STTQPS----KLIPPIRSRC---LPLFFRPVPDDEIRSVLESI-----AAAEGVEISDDGLDLIAYYAEGDLRKAILTL 227 (337)
T ss_pred ECCCCC----CCCHHHHHHC---EEEECCCCCHHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 238644----4752477624---45435898999999999999-----9984999899999999998699899999999