HHsearch alignment for GI: 254780627 and conserved domain: PRK12678
>PRK12678 transcription termination factor Rho; Provisional.
Probab=92.64 E-value=0.18 Score=30.48 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=31.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 89862788885799999999998630688168646
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~ 233 (502)
T Consensus 414 gLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlL 448 (667)
T PRK12678 414 GLIVSPPKAGKTTILQDIANAITTNNPECHLMVVL 448 (667)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 46757997872599999999998569972899997