HHsearch alignment for GI: 254780627 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.60 E-value=0.028 Score=36.20 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=70.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH------------CCCHHHHHHHH--HHCCHHH
Q ss_conf 898627888857999999999986306881686469888999999986------------19889999997--4031020
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR------------DNCALNLKDSL--RNIDLLL 264 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~------------~~~~~~fr~~~--r~~DvLl 264 (502)
T Consensus 226 i~lVGPTGVGKTTTiAKLAA~~~l~~-~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlIL 304 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHM-GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELIL 304 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEE
T ss_conf 99989999888999999999999974-99279995266537799999999998599459951899999999856999999
Q ss_pred HHHHHHHCCC--C--HH-HHHHHHHHHHHH---CCCEEEEECCCCHHHHCCCCHHH
Q ss_conf 5444453175--0--69-999999999885---69879996487567613630345
Q gi|254780627|r 265 IDDMQFLQGK--L--IQ-HEFCHLLNSLLD---SAKQVVAAADRPPSELESLDPRI 312 (502)
Q Consensus 265 iDDiqfl~gk--~--tq-ee~f~~~n~l~~---~gkqiv~tsd~~P~~l~~l~~rL 312 (502)
T Consensus 305 IDT----AGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f 356 (432)
T PRK12724 305 IDT----AGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred EEC----CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 929----9989789999999999998636678851799997889989999999984