HHsearch alignment for GI: 254780627 and conserved domain: PRK13826

>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=93.54  E-value=0.56  Score=26.99  Aligned_cols=102  Identities=17%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-H--HHHHHCCCHHHHH-------HHHHHCCHHHHHHHH
Q ss_conf             98627888857999999999986306881686469888999-9--9998619889999-------997403102054444
Q gi|254780627|r  200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR-F--ASAIRDNCALNLK-------DSLRNIDLLLIDDMQ  269 (502)
Q Consensus       200 fi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~-~--~~a~~~~~~~~fr-------~~~r~~DvLliDDiq  269 (502)
T Consensus       401 ~VvG~AGaGKStmL~aA-ReawEa~-GyrV~GaALsGkAAegLe~~sGI~SrTlAs~e~~w~~gr~~L~~~dVlVIDEAG  478 (1102)
T PRK13826        401 AVIGRAGAGKTTMMKAA-REAWEAA-GYRVVGGALAGKAAEGLEKEAGIASRTLSSWELRWNQGRDQLDNKTVFVLDEAG  478 (1102)
T ss_pred             EEEECCCCCHHHHHHHH-HHHHHHC-CCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf             99842888788999999-9999977-977980150078999775346953033899998743586556787389984555


Q ss_pred             HHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCC
Q ss_conf             5317506999999999988569879996487567613630
Q gi|254780627|r  270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD  309 (502)
Q Consensus       270 fl~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~  309 (502)
T Consensus       479 MVg----srqmarvl~~ae~aGAKvVLVGD--~~QLQpIe  512 (1102)
T PRK13826        479 MVS----SRQMALFVEAVTRAGAKLVLVGD--PEQLQPIE  512 (1102)
T ss_pred             CCC----HHHHHHHHHHHHHCCCEEEEECC--HHHHCCCC
T ss_conf             655----79999999999975998999688--78827610