HHsearch alignment for GI: 254780627 and conserved domain: PRK13833
>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=95.82 E-value=0.019 Score=37.41 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=73.2
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 44788763288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 160 pryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
T Consensus 116 ~~~tl~dlv~~g~~t~~~~~~L~~aV~~r~--------nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtI--ED-t~ 184 (323)
T PRK13833 116 RLIPLDDYVRSKVMTEAQASTIRSAISSRL--------NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL--ED-TA 184 (323)
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHCCC--------CEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEE--CC-CC
T ss_conf 999999998769999999999999998189--------68999177775689999999864028932339994--57-50
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHC
Q ss_conf 999998619889999997403102054444531750-6999999999988569879996487567613630345765302
Q gi|254780627|r 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 (502)
Q Consensus 240 ~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~ 318 (502)
T Consensus 185 EL------------~~~~~n~-------v~l~~~~~v~~~~Ll--~~aLRmrPDRIivGEvRG~EA~~-~L~A~nTGH~G 242 (323)
T PRK13833 185 EI------------QCAAENA-------VLLHTSDTVDMARLL--KSTMRLRPDRIIVGEVRDGAALT-LLKAWNTGHPG 242 (323)
T ss_pred CC------------CCCCCCE-------EEEECCCCCCHHHHH--HHHHCCCCCEEEEECCCCHHHHH-HHHHHHCCCCC
T ss_conf 11------------4678877-------787516986999999--99744699758883006599999-99998279998
Q ss_pred CEEEEECCCCHHH
Q ss_conf 1157751588899
Q gi|254780627|r 319 GVSVPLGLHDYEM 331 (502)
Q Consensus 319 Gl~~~i~~Pd~e~ 331 (502)
T Consensus 243 s~-tTiHAnsa~~ 254 (323)
T PRK13833 243 GV-TTIHSNTAMS 254 (323)
T ss_pred CC-CCCCCCCHHH
T ss_conf 63-4865799999