HHsearch alignment for GI: 254780627 and conserved domain: TIGR00362
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=100.00 E-value=0 Score=615.25 Aligned_cols=458 Identities=33% Similarity=0.534 Sum_probs=397.2
Q ss_pred CCHHHHHHHHHHHHHH--HCCHHHHHHHCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 7989999999999998--66978897430240578853--9989898389899999999899999999998627766507
Q gi|254780627|r 33 VNCESIFTIVSSRLKN--QVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 (502)
Q Consensus 33 ~d~~~iW~~il~~Lk~--~l~~~~F~tWi~pL~~i~~e--~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~ 108 (502)
T Consensus 2 ~~~~~~w~~~l~~~~~~p~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (493)
T TIGR00362 2 ESLSNLWQQALALLKKNPELSKPEFETWLKPLKALSLASKGDTLTLYAPNLFVLDWLEKKYGALLKEILTELTGGPALRL 81 (493)
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 52136899999987406553246788888766654201567515885151456767777778889999875126640011
Q ss_pred EEEECCCCCCCCCCCCC----------CCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 89721455555555566----------5544447533223222------1235544445434455764478876328861
Q gi|254780627|r 109 ILVRSVALPSVEKTASS----------PSITKLSPINTNISKS------PIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 (502)
Q Consensus 109 i~i~~~~~~~~~~~~~~----------~~~~~~~p~~~~~~~~------~~~~~~~~~~~~~~s~LNpryTFDnFVVG~s 172 (502)
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (493)
T TIGR00362 82 FLELGVKPVTPKPETKNPALNETFSKAPKLVEGTEPEPALPSPRDRIKLVEKALPEETTPFPKTSLNGKYTFDNFVVGPS 161 (493)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEEECCC
T ss_conf 10014312356631011134434433123553111145420024566555432000000001111132100000011465
Q ss_pred HHHHHHHHHHHHHCCCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCHH
Q ss_conf 47899999999824100-13655555489862788885799999999998630688168646988899999998619889
Q gi|254780627|r 173 NRVALTAAQSIAEVDSH-GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 (502)
Q Consensus 173 N~lA~aAAkaVAe~pg~-~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~~ 251 (502)
T Consensus 162 ~~~~~~~~~~~~~~p~~p~~-----~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (493)
T TIGR00362 162 NRLAYAASLKVAESPGKPAY-----NPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNKLD 236 (493)
T ss_pred CHHHHHHHHHHHCCCCCCCC-----CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 21567777776405787665-----6247744754215678777643444306773278850146789999875200168
Q ss_pred HHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHH
Q ss_conf 99999740310205444453175-06999999999988569879996487567613630345765302115775158889
Q gi|254780627|r 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 (502)
Q Consensus 252 ~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e 330 (502)
T Consensus 237 ~~~~~~~~~d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~p~~~~~~~~~l~~~~~~g~~~~~~~p~~~ 316 (493)
T TIGR00362 237 DFKKKYRSLDFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGKQIVLTSDRSPKEIPGLEDRLKSRFGWGLTADIEPPDLE 316 (493)
T ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCEEECCCCCHH
T ss_conf 88887631112311104764135203688888888774068527885166620100046777654301410002465235
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCCCC--
Q ss_conf 9999999999886431168978989999998502788899999999999986302-4687788999998763037887--
Q gi|254780627|r 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETK-- 407 (502)
Q Consensus 331 ~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-- 407 (502)
T Consensus 317 ~~~~~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (493)
T TIGR00362 317 TRLAILKKKA-----EEDGINLPEEVLEYIAQHLTSNVRELEGALIRVKAYADLDNADIDLDLVAEVLKDLLPALKEKTN 391 (493)
T ss_pred HHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7899988654-----43035652789999988642246777677887765420012100177789999876544310256
Q ss_pred ----CCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ----5798999999999809999994088877401445799999999851568789998847984379999999999998
Q gi|254780627|r 408 ----KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 (502)
Q Consensus 408 ----~i~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki~~~~ 483 (502)
T Consensus 392 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 471 (493)
T TIGR00362 392 EPNNLVTIENILKVVAEYLKLKVEDLKSKSRKRSVALPRQLALYLARELTDLSLPEIGEAFGGKDHTTVLYACRKIDKLR 471 (493)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 65321028889999888753245666421010023468899999998511342135666515630357888765445665
Q ss_pred HCCHH-----HHHHHHHHHHHH
Q ss_conf 61699-----999999999874
Q gi|254780627|r 484 ETDIT-----LKKEVELLKRLI 500 (502)
Q Consensus 484 ~~d~~-----~~~~i~~i~~~i 500 (502)
T Consensus 472 ~~~~~p~~~~~~~~~~~~~~~~ 493 (493)
T TIGR00362 472 EEDKEPFVLSLKEDLTNLLNTL 493 (493)
T ss_pred HCCCCCEEEHHHHHHHHHHHCC
T ss_conf 2155750111467899987319