HHsearch alignment for GI: 254780627 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.13 E-value=0.0042 Score=42.08 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=97.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCH-HHHHHHHHH-CCHHHHHHHHHHCCC--
Q ss_conf 8986278888579999999999863068816864698889999999861988-999999740-310205444453175--
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKDSLRN-IDLLLIDDMQFLQGK-- 274 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~~-~~fr~~~r~-~DvLliDDiqfl~gk-- 274 (502)
T Consensus 578 vll~GPPGtGktllakava~es~-----anfi~v~GPe~lskWvGes-e~~ir~if~~arq~aP~~~f~deidaiaP~rG 651 (980)
T TIGR01243 578 VLLFGPPGTGKTLLAKAVATESG-----ANFIAVRGPEILSKWVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARG 651 (980)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-----CCEEEECCCHHHHHHHCHH-HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCC
T ss_conf 48746898616888887740145-----6467740731223440324-79999999986412873787302111054124
Q ss_pred -C---------HHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHH--HHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf -0---------69999999999885698799964875676136303457--65302115775158889999999999988
Q gi|254780627|r 275 -L---------IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR--SRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 (502)
Q Consensus 275 -~---------tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~--SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~ 342 (502)
T Consensus 652 ~~~~~~~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi~---dPallrPGr~dr--~i~vP~Pd~~ar~~ifk~---- 722 (980)
T TIGR01243 652 ASLDEKGVTDRIVNQLLTELDGLEELSDVVVIAATNRPDIL---DPALLRPGRLDR--LILVPAPDEEARLEIFKI---- 722 (980)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC---CCCCCCCCCCCE--EEEECCCCHHHHHHHHHH----
T ss_conf 42100102689999999864044343665898615887423---610048874121--686059855676767655----
Q ss_pred HHHHCCCCCCCHHH-HHHHHHHCCCC
Q ss_conf 64311689789899-99998502788
Q gi|254780627|r 343 SQKEDPKLNINEEV-LMHVARTVTTS 367 (502)
Q Consensus 343 ~~~~~~~~~l~~~v-~~~la~~~~~~ 367 (502)
T Consensus 723 ---ht~~~~l~~dv~l~~la~~teGy 745 (980)
T TIGR01243 723 ---HTRSMPLAEDVDLEELAKKTEGY 745 (980)
T ss_pred ---HHCCCCCCCCCCHHHHHHHHCCC
T ss_conf ---31113530134389998651687