HHsearch alignment for GI: 254780627 and conserved domain: TIGR02759
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=94.24 E-value=0.038 Score=35.28 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=38.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 4898627888857999999999986306881686469888999999986
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~ 246 (502)
T Consensus 210 h~L~~GTtG~GKs~~lr~LL~~iR~rG-d~AIiYDkgC~f~~~fyd~~~ 257 (613)
T TIGR02759 210 HILIHGTTGSGKSVALRKLLRWIRQRG-DRAIIYDKGCTFVSRFYDPSQ 257 (613)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCC
T ss_conf 526645417438999999999998639-858998257420213268888