HHsearch alignment for GI: 254780627 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.38 E-value=0.0002 Score=51.53 Aligned_cols=175 Identities=22% Similarity=0.296 Sum_probs=114.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-C----CCCEEEEEHHHHHHHHH
Q ss_conf 288614789999999982410013655555489862788885799999999998630-6----88168646988899999
Q gi|254780627|r 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-P----NLRVVYLTAEYFMWRFA 242 (502)
Q Consensus 168 VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~----~~~v~y~~~e~F~~~~~ 242 (502)
T Consensus 189 vIGRd~EI~-----r~iqIL~Rr---~KNNPi-LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg----~Lv 255 (852)
T TIGR03345 189 VLGRDDEIR-----QMIDILLRR---RQNNPI-LTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG----LLQ 255 (852)
T ss_pred CCCCHHHHH-----HHHHHHHHH---CCCCCE-EECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHH----HHH
T ss_conf 869499999-----999999862---479974-6579998799999999999976999867743856786788----886
Q ss_pred HHHH-CCCHHH-HHHHHH----HC--CHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC-CC--
Q ss_conf 9986-198899-999974----03--10205444453175---06999999999988569879996487567613-63--
Q gi|254780627|r 243 SAIR-DNCALN-LKDSLR----NI--DLLLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SL-- 308 (502)
Q Consensus 243 ~a~~-~~~~~~-fr~~~r----~~--DvLliDDiqfl~gk---~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~-~l-- 308 (502)
T Consensus 256 AGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGelr~IGATT-~~EYrk~iEk 334 (852)
T TIGR03345 256 AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATT-WAEYKKYFEK 334 (852)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHC
T ss_conf 403576359999999999998489976999634877528998888622788751787378734998357-8999888642
Q ss_pred CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 0345765302115775158889999999999988643116897898999999
Q gi|254780627|r 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 (502)
Q Consensus 309 ~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~l 360 (502)
T Consensus 335 D~AL~RRFq---~V~V~EPs~eeti~IL~gl-k~~yE~hH~V~i~d~Ai~aA 382 (852)
T TIGR03345 335 DPALTRRFQ---VVKVEEPDEETAIRMLRGL-APVLEKHHGVLILDEAVVAA 382 (852)
T ss_pred CHHHHHHCC---CCCCCCCCHHHHHHHHHHH-HHHHHHCCCEEEEHHHHHHH
T ss_conf 688996247---5527999879999999987-99985547968708999999