HHsearch alignment for GI: 254780627 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.21 E-value=0.00012 Score=52.99 Aligned_cols=233 Identities=15% Similarity=0.250 Sum_probs=142.1
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHH------CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7644788763288614789999999982------4100136555554898627888857999999999986306881686
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAE------VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe------~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y 231 (502)
T Consensus 558 ~~le~~L~~~ViGQ~~Av~-~v~~ai~~sraGl~d~~rPi-----gsFLFlGPTGVGKTElAK~LA~~LFg~--e~~liR 629 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALE-AIAERIRTARAGLEDPRKPL-----GVFLLVGPSGVGKTETALALAELLYGG--EQNLIT 629 (852)
T ss_pred HHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHCCC--CCCEEE
T ss_conf 8679999999728499999-99999999871799999985-----689987899877899999999997198--611478
Q ss_pred EEHHHHHHHHHHHHHCCC---------HHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC--------
Q ss_conf 469888999999986198---------89999997--40310205444453175069999999999--8856--------
Q gi|254780627|r 232 LTAEYFMWRFASAIRDNC---------ALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS-------- 290 (502)
Q Consensus 232 ~~~e~F~~~~~~a~~~~~---------~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~-------- 290 (502)
T Consensus 630 ~DMSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEK-AHpdV~nilLQvlD~G~LtD~~Gr~vdF~ 708 (852)
T TIGR03345 630 INMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEK-AHPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ECCHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHH-CCHHHHHHHHHHHCCCEEECCCCCEEECE
T ss_conf 42243210436878638999766748777210988809986888611300-28899999998724677757999988452
Q ss_pred CCEEEEECCCCHHHH-------------------------CCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH--
Q ss_conf 987999648756761-------------------------36303457653021157751588899999999999886--
Q gi|254780627|r 291 AKQVVAAADRPPSEL-------------------------ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS-- 343 (502)
Q Consensus 291 gkqiv~tsd~~P~~l-------------------------~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~-- 343 (502)
T Consensus 709 NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRi-~--ii~F~~L~~~~l~~Iv~~~l~~l~~ 785 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRM-T--VIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred EEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCE-E--EEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 129997572447999864037655566899999999999834798886456-6--8973689999999999999999999
Q ss_pred -HHHC--CCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf -4311--68978989999998502788---89999999999998630246877889999987630378875798
Q gi|254780627|r 344 -QKED--PKLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRI 411 (502)
Q Consensus 344 -~~~~--~~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 411 (502)
T Consensus 786 rL~~~~~i~l~~~~~~~~~l~~~g~~~~~GARpl~r~I~~~---------i~~~la~~iL~~~~~g~~~~~i~~ 850 (852)
T TIGR03345 786 RLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT---------LLPELSRQILERLAAGEPIERIHL 850 (852)
T ss_pred HHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHH---------HHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99862896899889999999982899776864389999999---------889999999998708997248881