HHsearch alignment for GI: 254780627 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.12 E-value=0.0017 Score=44.95 Aligned_cols=69 Identities=25% Similarity=0.419 Sum_probs=48.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH-------HHHHHHHHH-----CCCHHHHH---HHHHHCCHH
Q ss_conf 898627888857999999999986306881686469888-------999999986-----19889999---997403102
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF-------MWRFASAIR-----DNCALNLK---DSLRNIDLL 263 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F-------~~~~~~a~~-----~~~~~~fr---~~~r~~DvL 263 (502)
T Consensus 197 i~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~~~~~~d~I 276 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKALERLRDKDLI 276 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCEE
T ss_conf 99977888757889999999999973899679998077767899999999999597489939999999999865798999
Q ss_pred HHHH
Q ss_conf 0544
Q gi|254780627|r 264 LIDD 267 (502)
Q Consensus 264 liDD 267 (502)
T Consensus 277 lIDT 280 (282)
T TIGR03499 277 LIDT 280 (282)
T ss_pred EEEC
T ss_conf 9819