HHsearch alignment for GI: 254780627 and conserved domain: TIGR03499

>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.12  E-value=0.0017  Score=44.95  Aligned_cols=69  Identities=25%  Similarity=0.419  Sum_probs=48.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH-------HHHHHHHHH-----CCCHHHHH---HHHHHCCHH
Q ss_conf             898627888857999999999986306881686469888-------999999986-----19889999---997403102
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF-------MWRFASAIR-----DNCALNLK---DSLRNIDLL  263 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F-------~~~~~~a~~-----~~~~~~fr---~~~r~~DvL  263 (502)
T Consensus       197 i~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~~~~~~d~I  276 (282)
T TIGR03499       197 IALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKALERLRDKDLI  276 (282)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCCCEE
T ss_conf             99977888757889999999999973899679998077767899999999999597489939999999999865798999


Q ss_pred             HHHH
Q ss_conf             0544
Q gi|254780627|r  264 LIDD  267 (502)
Q Consensus       264 liDD  267 (502)
T Consensus       277 lIDT  280 (282)
T TIGR03499       277 LIDT  280 (282)
T ss_pred             EEEC
T ss_conf             9819