HHsearch alignment for GI: 254780627 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.89 E-value=0.0077 Score=40.19 Aligned_cols=82 Identities=26% Similarity=0.294 Sum_probs=54.9
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 89862788885799-999999998630688168646988-8999999986198899999974031020544445317506
Q gi|254780627|r 199 LFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t 276 (502)
T Consensus 58 vei~G~essGKTtlal~~ia~-aQk~--gg~~~~iDaE~a~d~~~a~~l-------------GVD~---~~l~-~~qp~~ 117 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAE-AQKL--GGTVAFIDAEHALDPVYAKKL-------------GVDL---DNLL-ISQPDT 117 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC--CCEEEEEEHHHCCCHHHHHHC-------------CCCH---HHEE-EECCCH
T ss_conf 999889877799999999999-8735--983999962542598999980-------------9984---6758-966638
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999999999988569879996487
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQVVAAADR 300 (502)
Q Consensus 277 qee~f~~~n~l~~~gkqiv~tsd~ 300 (502)
T Consensus 118 ~Eq~l~i~~~li~s~~~dliViDS 141 (325)
T cd00983 118 GEQALEIADSLVRSGAVDLIVVDS 141 (325)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 999999999975158876799815