HHsearch alignment for GI: 254780627 and conserved domain: cd00983

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.89  E-value=0.0077  Score=40.19  Aligned_cols=82  Identities=26%  Similarity=0.294  Sum_probs=54.9

Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHHH-HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf             89862788885799-999999998630688168646988-8999999986198899999974031020544445317506
Q gi|254780627|r  199 LFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAEY-FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI  276 (502)
Q Consensus       199 Lfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e~-F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t  276 (502)
T Consensus        58 vei~G~essGKTtlal~~ia~-aQk~--gg~~~~iDaE~a~d~~~a~~l-------------GVD~---~~l~-~~qp~~  117 (325)
T cd00983          58 IEIYGPESSGKTTLALHAIAE-AQKL--GGTVAFIDAEHALDPVYAKKL-------------GVDL---DNLL-ISQPDT  117 (325)
T ss_pred             EEEECCCCCCHHHHHHHHHHH-HHHC--CCEEEEEEHHHCCCHHHHHHC-------------CCCH---HHEE-EECCCH
T ss_conf             999889877799999999999-8735--983999962542598999980-------------9984---6758-966638


Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             999999999988569879996487
Q gi|254780627|r  277 QHEFCHLLNSLLDSAKQVVAAADR  300 (502)
Q Consensus       277 qee~f~~~n~l~~~gkqiv~tsd~  300 (502)
T Consensus       118 ~Eq~l~i~~~li~s~~~dliViDS  141 (325)
T cd00983         118 GEQALEIADSLVRSGAVDLIVVDS  141 (325)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             999999999975158876799815