HHsearch alignment for GI: 254780627 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.48 E-value=0.051 Score=34.35 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=33.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH----HHHHHHHHHHH
Q ss_conf 8986278888579999999999863068816864698----88999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE----YFMWRFASAIR 246 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e----~F~~~~~~a~~ 246 (502)
T Consensus 16 ~vi~a~~g~GKS~~~~~la~~~a~~~-g~~V~~~SlEm~~~~~~~R~~s~~~ 66 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEMSKEQLLQRLLASES 66 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99996899999999999999999977-9959999333538899999999982