HHsearch alignment for GI: 254780627 and conserved domain: cd01128

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.17  E-value=0.0075  Score=40.27  Aligned_cols=47  Identities=34%  Similarity=0.381  Sum_probs=35.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EHHHH--HHHHHHHH
Q ss_conf             8986278888579999999999863068816864-69888--99999998
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL-TAEYF--MWRFASAI  245 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~-~~e~F--~~~~~~a~  245 (502)
T Consensus        19 ~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~   68 (249)
T cd01128          19 GLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV   68 (249)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHH
T ss_conf             78878999889999999999999858984999999716579999999971