HHsearch alignment for GI: 254780627 and conserved domain: cd01133
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.23 E-value=0.086 Score=32.78 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 8986278888579999999999863068816864698
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e 235 (502)
T Consensus 72 ~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~~IGe 108 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE 108 (274)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 7875799998236899999999850898799998425