HHsearch alignment for GI: 254780627 and conserved domain: cd03217
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.09 E-value=0.077 Score=33.10 Aligned_cols=125 Identities=19% Similarity=0.181 Sum_probs=60.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH-----------------------HHH----HHHHHHHHC----
Q ss_conf 8986278888579999999999863068816864698-----------------------889----999999861----
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE-----------------------YFM----WRFASAIRD---- 247 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e-----------------------~F~----~~~~~a~~~---- 247 (502)
T Consensus 29 ~~iiGpnGaGKSTLl~~i~G~~-~~~~~~G~I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~~~~~LSG 107 (200)
T cd03217 29 HALMGPNGSGKSTLAKTIMGHP-KYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSG 107 (200)
T ss_pred EEEECCCCCCHHHHHHHHCCCC-CCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHHHCCCCCH
T ss_conf 9999689999999999970777-778520079999999886999999976948963676870798499999764636799
Q ss_pred C---CHHHHHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC-CHHHHHHHHCCEE
Q ss_conf 9---88999999740310205444453175--0699999999998856987999648756761363-0345765302115
Q gi|254780627|r 248 N---CALNLKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVS 321 (502)
Q Consensus 248 ~---~~~~fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l-~~rL~SR~~~Gl~ 321 (502)
T Consensus 108 Gekqrv~iaral~~~P~lllLDE--PtsgLD~~~~~~i~~~i~~l~~~g~tiiiitH-~~~~~~~~~~Drv-~vl~~Gki 183 (200)
T cd03217 108 GEKKRNEILQLLLLEPDLAILDE--PDSGLDIDALRLVAEVINKLREEGKSVLIITH-YQRLLDYIKPDRV-HVLYDGRI 183 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHHHHCCCEE-EEEECCEE
T ss_conf 99999999999960999999969--62269999999999999999857999999996-3687766469999-99879999
Q ss_pred EEECCCC
Q ss_conf 7751588
Q gi|254780627|r 322 VPLGLHD 328 (502)
Q Consensus 322 ~~i~~Pd 328 (502)
T Consensus 184 v~~G~~e 190 (200)
T cd03217 184 VKSGDKE 190 (200)
T ss_pred EEEECHH
T ss_conf 9997999