HHsearch alignment for GI: 254780627 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.49 E-value=0.049 Score=34.52 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 89862788885799999999998
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASI 221 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~ 221 (502)
T Consensus 51 vgilG~NGaGKSTLl~~i~Gl~~ 73 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99997999819999999975877