HHsearch alignment for GI: 254780627 and conserved domain: cd03221

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.10  E-value=0.027  Score=36.39  Aligned_cols=102  Identities=20%  Similarity=0.181  Sum_probs=60.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH------CCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             48986278888579999999999863------068816864698889999999861988999999740310205444453
Q gi|254780627|r  198 PLFIHASVGLGKTHLLQAIANASIKR------QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL  271 (502)
Q Consensus       198 PLfi~G~~GlGKTHLl~ai~~~~~~~------~~~~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl  271 (502)
T Consensus        28 ~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~~i~y~~Q------L-SgGqkqr~~la~al~~~p~iliLDEP--t   98 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------L-SGGEKMRLALAKLLLENPNLLLLDEP--T   98 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHH------C-CHHHHHHHHHHHHHCCCCCEEEEECC--C
T ss_conf             9999989998499999998489889850999999608998700------7-99999999999997259989999577--5


Q ss_pred             CCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHH
Q ss_conf             175--06999999999988569879996487567613630345
Q gi|254780627|r  272 QGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI  312 (502)
Q Consensus       272 ~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL  312 (502)
T Consensus        99 ~~LD~~~~~~i~~~l---~~~~~tii~vsHd-~~~~~~~~dri  137 (144)
T cd03221          99 NHLDLESIEALEEAL---KEYPGTVILVSHD-RYFLDQVATKI  137 (144)
T ss_pred             CCCCHHHHHHHHHHH---HHCCCEEEEEECC-HHHHHHHCCEE
T ss_conf             558999999999999---9709999999679-89999879999