HHsearch alignment for GI: 254780627 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.64 E-value=0.031 Score=35.87 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=73.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC-----CCCCEEEEEHHHHHHHHHHHHHCC---CHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 89862788885799999999998630-----688168646988899999998619---8899999974031020544445
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQ-----PNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQF 270 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~-----~~~~v~y~~~e~F~~~~~~a~~~~---~~~~fr~~~r~~DvLliDDiqf 270 (502)
T Consensus 28 v~ilGpNGaGKSTllk~i~G~l~p~~G~i~~~g~~~~~~p------q~~~-LSGGqrQRv~iAral~~~p~lllLDE--P 98 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKP------QYID-LSGGELQRVAIAAALLRNATFYLFDE--P 98 (177)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCCEECCC------CCCC-CCHHHHHHHHHHHHHHCCCCEEEECC--C
T ss_conf 9998999999999999996886788994666686122155------5150-79899999999999823999999748--8
Q ss_pred HCCC--CHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHHHHHHHCCEEE-EECCCCHHHH
Q ss_conf 3175--069999999999885698-799964875676136303457653021157-7515888999
Q gi|254780627|r 271 LQGK--LIQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGGVSV-PLGLHDYEMR 332 (502)
Q Consensus 271 l~gk--~tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~-~i~~Pd~e~r 332 (502)
T Consensus 99 ts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vs-Hdl~~a~~~aDrI~vl-~g~~~~~g~~~~~~~~~ 162 (177)
T cd03222 99 SAYLDIEQRLNAARAIRRLSEEGKKTALVVE-HDLAVLDYLSDRIHVF-EGEPGVYGIASQPKGTR 162 (177)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCHHHHHHHCCEEEEE-ECCCCEEEEECCHHHHH
T ss_conf 6538999999999999999996597799985-8899999869999999-38982698848814540