HHsearch alignment for GI: 254780627 and conserved domain: cd03239
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.51 E-value=0.83 Score=25.78 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
T Consensus 25 ~~ivG~nGsGKSni~~ai~~~~g~ 48 (178)
T cd03239 25 NAIVGPNGSGKSNIVDAICFVLGG 48 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 799899988778999999999866