HHsearch alignment for GI: 254780627 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.17 E-value=0.18 Score=30.48 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=22.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 898627888857999999999986306881686469
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~ 234 (502)
T Consensus 43 vaIvG~sGsGKSTL~~ll~gl~~---p~~G~I~idg 75 (226)
T cd03248 43 TALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDG 75 (226)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECC
T ss_conf 99999999849999999964546---7887899999