HHsearch alignment for GI: 254780627 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.063 Score=33.74 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8986278888579999999999
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANAS 220 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~ 220 (502)
T Consensus 31 i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 31 VALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999899982999999996676