HHsearch alignment for GI: 254780627 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.61 E-value=0.28 Score=29.12 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 898627888857999999999986
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIK 222 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~ 222 (502)
T Consensus 34 ~gllG~NGaGKSTllk~i~Gl~~p 57 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999999998499999999779778