HHsearch alignment for GI: 254780627 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=96.78 E-value=0.014 Score=38.44 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=53.9
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHHHCCCCCEEEEEHHHHH-HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCH
Q ss_conf 89862788885799-99999999863068816864698889-99999986198899999974031020544445317506
Q gi|254780627|r 199 LFIHASVGLGKTHL-LQAIANASIKRQPNLRVVYLTAEYFM-WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 (502)
Q Consensus 199 Lfi~G~~GlGKTHL-l~ai~~~~~~~~~~~~v~y~~~e~F~-~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~t 276 (502)
T Consensus 55 ~ei~G~essGKTtlal~~ia~-aQk--~gg~~~~iD~E~a~d~~~a~~lG-------------VD~---~~l-~~~qpd~ 114 (322)
T pfam00154 55 IEIYGPESSGKTTLALHAIAE-AQK--AGGTAAFIDAEHALDPVYAKKLG-------------VDI---DNL-LVSQPDT 114 (322)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH--CCCEEEEEEHHHHCCHHHHHHCC-------------CCH---HHE-EEECCCH
T ss_conf 999889877789999999999-973--49938998536605988999809-------------880---253-8977883
Q ss_pred HHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99999999998856987999648
Q gi|254780627|r 277 QHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 277 qee~f~~~n~l~~~gkqiv~tsd 299 (502)
T Consensus 115 ~Eqal~i~~~li~~~~~~liViD 137 (322)
T pfam00154 115 GEQALEIADMLVRSGAVDLIVVD 137 (322)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99999999998537997659982