HHsearch alignment for GI: 254780627 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=92.71 E-value=0.3 Score=28.87 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=37.9
Q ss_pred EEEHHHHHHHHHHHHHCCCHHHHHHHHH-HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 6469888999999986198899999974-03102054444531750699999999998856987999648
Q gi|254780627|r 231 YLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 (502)
Q Consensus 231 y~~~e~F~~~~~~a~~~~~~~~fr~~~r-~~DvLliDDiqfl~gk~tqee~f~~~n~l~~~gkqiv~tsd 299 (502)
T Consensus 185 ~~Df~Dll~~~~~lL~~~--~~~~~~~~~r~~~ilVDEfQDtn--~~Q~~i---l~~L~~~~~~l~~VGD 247 (494)
T pfam00580 185 ALDFDDLLLLTLELLRSD--PELLEAYRERFKYILVDEFQDTN--PIQYEL---LKLLAGGHPNLFLVGD 247 (494)
T ss_pred CCCHHHHHHHHHHHHHCC--HHHHHHHHHHCCEEECHHHCCCH--HHHHHH---HHHHHCCCCEEEEEEC
T ss_conf 989899999999997319--99999998607265403430264--999999---9998658983999817