HHsearch alignment for GI: 254780627 and conserved domain: pfam02456
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=93.31 E-value=0.063 Score=33.73 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=27.7
Q ss_pred CEE--EEECCCCCCHHHHHHHHH-HHHHHHCCCCCEEEEEHHH
Q ss_conf 548--986278888579999999-9998630688168646988
Q gi|254780627|r 197 NPL--FIHASVGLGKTHLLQAIA-NASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 197 NPL--fi~G~~GlGKTHLl~ai~-~~~~~~~~~~~v~y~~~e~ 236 (502)
T Consensus 86 qP~I~vVYGPTG~GKSQLlRNlis~~lI~P~PE-TVfFItPq~ 127 (370)
T pfam02456 86 QPVIGVVYGPTGCGKSQLLRNLLSCQLIQPIPE-TVFFITPQK 127 (370)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCC-EEEEECCCC
T ss_conf 744999988998778999999873466779997-289976777