HHsearch alignment for GI: 254780627 and conserved domain: pfam02456

>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=93.31  E-value=0.063  Score=33.73  Aligned_cols=39  Identities=26%  Similarity=0.523  Sum_probs=27.7

Q ss_pred             CEE--EEECCCCCCHHHHHHHHH-HHHHHHCCCCCEEEEEHHH
Q ss_conf             548--986278888579999999-9998630688168646988
Q gi|254780627|r  197 NPL--FIHASVGLGKTHLLQAIA-NASIKRQPNLRVVYLTAEY  236 (502)
Q Consensus       197 NPL--fi~G~~GlGKTHLl~ai~-~~~~~~~~~~~v~y~~~e~  236 (502)
T Consensus        86 qP~I~vVYGPTG~GKSQLlRNlis~~lI~P~PE-TVfFItPq~  127 (370)
T pfam02456        86 QPVIGVVYGPTGCGKSQLLRNLLSCQLIQPIPE-TVFFITPQK  127 (370)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCC-EEEEECCCC
T ss_conf             744999988998778999999873466779997-289976777