HHsearch alignment for GI: 254780627 and conserved domain: pfam03215
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.81 E-value=0.049 Score=34.50 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=90.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----HCCCCCEEEEEHHHHHHHHHHHH------HCCCHHHHHHH------HH--
Q ss_conf 4898627888857999999999986-----30688168646988899999998------61988999999------74--
Q gi|254780627|r 198 PLFIHASVGLGKTHLLQAIANASIK-----RQPNLRVVYLTAEYFMWRFASAI------RDNCALNLKDS------LR-- 258 (502)
Q Consensus 198 PLfi~G~~GlGKTHLl~ai~~~~~~-----~~~~~~v~y~~~e~F~~~~~~a~------~~~~~~~fr~~------~r-- 258 (502)
T Consensus 47 iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~----~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL 122 (490)
T pfam03215 47 ILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEY----LHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSL 122 (490)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCC----CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 89987989988999999999975968998148654----56775022101212345766663777767887622335654
Q ss_pred -----HCCHHHHHHHHHHCCCCHHHHHHHHHHHH-HHCCC-E-EEEECCC-CH-HHH----CCC-CHHH----HHHHHCC
Q ss_conf -----03102054444531750699999999998-85698-7-9996487-56-761----363-0345----7653021
Q gi|254780627|r 259 -----NIDLLLIDDMQFLQGKLIQHEFCHLLNSL-LDSAK-Q-VVAAADR-PP-SEL----ESL-DPRI----RSRLQGG 319 (502)
Q Consensus 259 -----~~DvLliDDiqfl~gk~tqee~f~~~n~l-~~~gk-q-iv~tsd~-~P-~~l----~~l-~~rL----~SR~~~G 319 (502)
T Consensus 123 ~~~~~~kriILIEE~Pn~~~~-d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLlg~eIl~hp~i 201 (490)
T pfam03215 123 QGGGLKKKLILVEELPNQFYS-DAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDRFGIDAETIMTKDILIMPRI 201 (490)
T ss_pred CCCCCCCEEEEEECCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCCC
T ss_conf 457887359999658874423-6699999999999708999879999704666677643323210786359888708896
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1577515888999999999998864311689789899999985027888999999999999863
Q gi|254780627|r 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 (502)
Q Consensus 320 l~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~ 383 (502)
T Consensus 202 ~~I~FNpIApT~M~KaL~~I~~kE-~-~~~~~~~~~~le~Ia~~S~GDIRs---AInsLQF~~~ 260 (490)
T pfam03215 202 DTITFNPIAPTFMKKALVRISVQE-G-KLKSPKSDSKLEVICQEAGGDLRS---AINSLQFSSS 260 (490)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHH-C-CCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHCC
T ss_conf 369868887889999999999985-7-655675203899999864872999---9999998626